Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 7.4e-45 184.9 241 100.0
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 2.7e-31 139.8 212 92.0
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.1e-27 126.3 243 86.0
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 4.1e-27 125.9 240 89.2
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 7.7e-26 121.7 236 89.0
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.7e-26 121.7 236 89.0
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.7e-26 121.7 236 89.0
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.7e-26 121.7 236 89.0
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.5e-25 118.2 236 87.3
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.6e-23 114.0 193 89.6
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 6.1e-23 112.1 241 86.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.4e-22 110.9 59 88.1
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.4e-22 110.9 59 88.1
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.5e-21 107.5 194 88.1
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 2.6e-21 106.7 237 86.9
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 3.3e-21 106.3 59 81.4
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 4.4e-21 105.9 194 87.6
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.7e-20 104.0 223 83.0
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 4.8e-20 102.4 59 78.0
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.1e-19 101.3 279 56.6
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 3.1e-19 99.8 59 78.0
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 4.1e-19 99.4 59 78.0
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 7.0e-19 98.6 59 78.0
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 9.1e-19 98.2 55 83.6
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.6e-18 97.4 55 83.6
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.6e-18 97.4 59 76.3
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 2.2e-17 93.6 251 75.3
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 5.0e-17 92.4 59 76.3
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 5.0e-17 92.4 56 78.6
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.6e-15 87.4 59 72.9
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.0e-14 83.2 213 76.1
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 8.8e-14 81.6 59 67.8
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.5e-13 80.9 62 69.4
Actinidia13869 Actinidia chinensis HOM05D000283 ORTHO05D000358 7.0e-11 72.0 209 88.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 4.5e-10 69.3 64 57.8
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 7.7e-10 68.6 65 56.9
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.0e-09 68.2 51 68.6
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.3e-09 67.8 51 68.6
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.7e-09 67.4 51 64.7
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.8e-09 66.2 51 64.7
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 5.0e-09 65.9 67 58.2
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 5.0e-09 65.9 57 61.4
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.0e-09 65.9 51 66.7
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 6.5e-09 65.5 59 61.0
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 6.5e-09 65.5 51 64.7
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 8.5e-09 65.1 45 62.2
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 8.5e-09 65.1 53 64.2
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 8.5e-09 65.1 53 64.2
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.1e-08 64.7 51 64.7
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.5e-08 64.3 57 61.4
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.5e-08 64.3 56 62.5
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.5e-08 64.3 51 62.7
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.5e-08 63.5 40 65.0
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.5e-08 63.5 51 60.8
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.5e-08 63.5 41 65.9
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 2.5e-08 63.5 159 30.8
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.5e-08 63.5 58 60.3
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.2e-08 63.2 55 60.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.2e-08 62.8 56 58.9
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 4.2e-08 62.8 56 60.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 4.2e-08 62.8 51 60.8
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 4.2e-08 62.8 41 63.4
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.5e-08 62.4 51 60.8
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 5.5e-08 62.4 52 59.6
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 5.5e-08 62.4 62 54.8
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 7.2e-08 62.0 51 58.8
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 7.2e-08 62.0 52 59.6
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 7.2e-08 62.0 59 57.6
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 9.4e-08 61.6 51 62.7
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 9.4e-08 61.6 51 58.8
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 9.4e-08 61.6 51 58.8
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 9.4e-08 61.6 48 68.8
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 9.4e-08 61.6 51 58.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 9.4e-08 61.6 51 58.8
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 9.4e-08 61.6 51 58.8
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 9.4e-08 61.6 55 58.2
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 9.4e-08 61.6 51 58.8
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.2e-07 61.2 56 57.1
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.2e-07 61.2 52 57.7
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.6e-07 60.8 53 60.4
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-07 60.8 60 53.3
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.6e-07 60.8 60 53.3
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.6e-07 60.8 51 58.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.6e-07 60.8 51 60.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.6e-07 60.8 51 58.8
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.6e-07 60.8 51 58.8
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.6e-07 60.8 51 58.8
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.6e-07 60.8 51 58.8
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.1e-07 60.5 52 59.6
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.1e-07 60.5 51 60.8
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 2.1e-07 60.5 42 64.3
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.7e-07 60.1 50 64.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 2.7e-07 60.1 51 58.8
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 2.7e-07 60.1 50 64.0
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.7e-07 60.1 51 60.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.7e-07 60.1 58 56.9
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.7e-07 60.1 51 62.7
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.7e-07 60.1 56 58.9
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.6e-07 59.7 52 61.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.6e-07 59.7 51 58.8
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 3.6e-07 59.7 51 60.8
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.6e-07 59.7 43 60.5
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 4.7e-07 59.3 44 61.4
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 4.7e-07 59.3 51 56.9
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.7e-07 59.3 51 58.8
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 4.7e-07 59.3 48 66.7
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.7e-07 59.3 51 58.8
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 6.1e-07 58.9 56 55.4
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 6.1e-07 58.9 59 55.9
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.1e-07 58.9 55 56.4
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 8.0e-07 58.5 51 56.9
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 8.0e-07 58.5 60 51.7
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.0e-06 58.2 56 55.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.0e-06 58.2 51 54.9
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.0e-06 58.2 51 54.9
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.0e-06 58.2 51 54.9
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.4e-06 57.8 51 54.9
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.4e-06 57.8 51 54.9
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 1.8e-06 57.4 51 54.9
vmacro23491 Vaccinium macrocarpon HOM05D004463 ORTHO05D004724 1.8e-06 57.4 25 88.0
Hma1.2p1_0067F.1_g037090 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.3e-06 57.0 209 41.1
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.3e-06 57.0 48 58.3
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.0e-06 56.6 51 54.9
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.0e-06 56.6 56 53.6
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 3.0e-06 56.6 42 59.5
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 3.0e-06 56.6 57 52.6
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 3.0e-06 56.6 55 60.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 61 52.5
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 4.0e-06 56.2 49 59.2
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 4.0e-06 56.2 54 55.6
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 54 55.6
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 54 55.6
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.0e-06 56.2 54 55.6
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 4.0e-06 56.2 51 52.9
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.0e-06 56.2 55 56.4
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.2e-06 55.8 41 61.0
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 5.2e-06 55.8 57 56.1
GSVIVG01030915001 Vitis vinifera HOM05D000054 ORTHO05D008307 5.2e-06 55.8 24 95.8
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.8e-06 55.5 54 51.9
HanXRQChr08g0220301 Helianthus annuus HOM05D001446 ORTHO05D045219 6.8e-06 55.5 23 91.3
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 6.8e-06 55.5 53 52.8
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 8.8e-06 55.1 54 51.9
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 8.8e-06 55.1 54 51.9


User provided reference genes

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