Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 4.7e-118 427.9 224 100.0
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.1e-110 401.0 224 95.1
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.4e-106 389.8 217 94.9
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.1e-98 362.1 222 88.7
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 2.9e-96 355.5 224 82.6
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 3.2e-95 352.1 224 80.8
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 7.2e-95 350.9 224 82.1
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 7.2e-95 350.9 224 79.5
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.6e-94 348.6 200 93.0
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 3.6e-94 348.6 224 79.0
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 3.6e-94 348.6 224 80.8
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 1.0e-93 347.1 224 80.8
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 1.4e-93 346.7 224 79.0
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 1.8e-93 346.3 224 79.5
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 1.8e-93 346.3 224 79.5
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 1.8e-93 346.3 224 78.6
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 2.3e-93 345.9 224 79.9
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 4.0e-93 345.1 224 79.0
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 4.0e-93 345.1 223 79.4
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 5.2e-93 344.7 224 79.9
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 5.2e-93 344.7 224 79.0
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.0e-92 342.8 225 81.3
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 2.0e-92 342.8 224 78.1
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 2.6e-92 342.4 224 78.6
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.4e-92 342.0 225 81.3
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 4.4e-92 341.7 224 79.0
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 5.7e-92 341.3 224 77.2
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 1.3e-91 340.1 224 78.6
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.3e-91 340.1 224 78.6
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 1.3e-91 340.1 224 78.1
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 1.3e-91 340.1 224 78.6
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 2.8e-91 339.0 224 78.6
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 3.7e-91 338.6 224 77.2
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 6.3e-91 337.8 224 79.0
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 6.3e-91 337.8 224 79.0
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 1.1e-90 337.0 224 77.2
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 1.1e-90 337.0 224 78.6
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 1.8e-90 336.3 221 77.8
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 2.4e-90 335.9 224 77.7
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 2.4e-90 335.9 224 76.3
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 3.1e-90 335.5 224 76.8
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 3.1e-90 335.5 224 78.6
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 4.1e-90 335.1 224 78.1
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 4.1e-90 335.1 224 79.0
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 5.4e-90 334.7 224 76.3
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 7.0e-90 334.3 224 76.8
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 7.0e-90 334.3 224 76.8
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 2.0e-89 332.8 224 77.2
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 2.7e-89 332.4 224 76.3
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 3.5e-89 332.0 260 68.8
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 5.9e-89 331.3 224 76.8
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 1.0e-88 330.5 222 76.6
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 1.3e-88 330.1 224 75.0
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 1.3e-88 330.1 224 75.0
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 1.7e-88 329.7 241 73.4
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 1.7e-88 329.7 224 76.3
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 2.9e-88 328.9 224 76.3
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 3.8e-88 328.6 224 74.1
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 1.1e-87 327.0 224 74.1
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 1.1e-87 327.0 224 75.0
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 1.1e-87 327.0 224 73.2
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 2.5e-87 325.9 224 76.8
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 3.3e-87 325.5 224 73.7
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 3.3e-87 325.5 222 73.9
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 4.3e-87 325.1 224 75.4
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 3.6e-86 322.0 224 74.1
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 1.0e-85 320.5 224 74.6
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 3.0e-85 318.9 224 74.6
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 6.8e-85 317.8 223 74.0
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 8.9e-85 317.4 224 72.8
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 1.2e-84 317.0 224 75.0
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 2.6e-84 315.8 224 73.7
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 9.8e-84 313.9 224 74.1
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 9.8e-84 313.9 224 70.1
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.2e-83 312.8 224 74.1
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 2.2e-83 312.8 224 73.2
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 2.9e-83 312.4 224 71.9
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 3.7e-83 312.0 224 72.8
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 1.8e-82 309.7 223 71.7
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 2.4e-82 309.3 223 71.3
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 1.6e-81 306.6 224 71.9
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 3.5e-81 305.4 224 71.4
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 1.0e-80 303.9 223 71.3
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 1.0e-80 303.9 223 71.3
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 1.0e-80 303.9 224 68.8
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 1.3e-80 303.5 223 70.4
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 1.3e-80 303.5 223 70.9
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 1.7e-80 303.1 223 71.3
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 1.7e-80 303.1 223 70.9
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 1.7e-80 303.1 223 70.9
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.7e-80 303.1 224 76.8
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 1.7e-80 303.1 223 70.9
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.3e-80 302.8 206 79.6
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.3e-80 302.8 211 77.3
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 5.0e-80 301.6 223 70.0
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 8.6e-80 300.8 223 70.0
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 2.5e-79 299.3 223 70.4
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 8.0e-78 294.3 223 68.6
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 2.3e-77 292.7 224 67.4
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 2.6e-76 289.3 224 67.0
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 3.4e-76 288.9 224 67.4
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 9.8e-76 287.3 194 74.7
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 1.7e-75 286.6 221 66.1
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 3.7e-75 285.4 206 72.3
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.1e-74 283.9 223 68.6
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.4e-74 281.6 218 72.9
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 4.6e-73 278.5 230 67.8
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 6.0e-73 278.1 224 64.7
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 2.3e-72 276.2 199 71.9
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 3.9e-72 275.4 207 71.5
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 8.6e-72 274.2 199 71.4
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.6e-70 270.0 224 65.2
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 5.2e-69 265.0 222 66.2
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 3.4e-68 262.3 224 61.6
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 3.4e-68 262.3 225 64.9
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 9.8e-68 260.8 225 64.0
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 6.4e-67 258.1 224 64.7
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 4.1e-66 255.4 166 80.1
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 4.6e-65 251.9 224 62.5
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 5.1e-64 248.4 224 61.2
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 5.2e-61 238.4 213 62.4
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 1.2e-60 237.3 147 83.7
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 1.9e-58 229.9 148 81.1
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 2.3e-56 223.0 146 79.5
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 5.1e-56 221.9 196 63.8
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 5.1e-56 221.9 149 79.9
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.2e-54 217.2 205 61.5
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 8.9e-53 211.1 217 55.8
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.2e-52 210.7 224 54.9
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.2e-52 210.7 224 54.9
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 4.0e-45 185.7 191 56.0
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 5.8e-44 181.8 108 86.1
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 7.6e-44 181.4 154 64.3
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 2.9e-43 179.5 154 62.3
Cc00_g05440 Coffea canephora HOM05D003462 ORTHO05D003946 4.2e-42 175.6 214 51.9
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 4.2e-42 175.6 148 65.5
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 3.5e-41 172.6 122 72.1
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 1.3e-40 170.6 184 56.5
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 6.6e-40 168.3 141 66.0
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 3.3e-39 166.0 100 85.0
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 4.8e-38 162.2 112 75.0
FAN13G0008 Fragaria x ananassa HOM05D003462 ORTHO05D003946 9.9e-36 154.5 100 80.0
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 2.4e-34 149.8 170 57.1
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 3.2e-34 149.4 104 74.0
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 7.1e-34 148.3 100 76.0
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 9.3e-34 147.9 159 55.3
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 8.7e-32 141.4 178 47.2
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 4.8e-30 135.6 127 59.1
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 1.4e-29 134.0 129 60.5
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 4.9e-27 125.6 69 92.8
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 3.2e-26 122.9 122 57.4
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 5.5e-26 122.1 179 43.0
Medtr4g133130 Medicago truncatula HOM05D000348 ORTHO05D003946 1.6e-25 120.6 146 52.1
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 7.9e-25 118.2 174 43.7
FAN18G1391 Fragaria x ananassa HOM05D003462 ORTHO05D003946 3.0e-24 116.3 131 55.7
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 5.7e-23 112.1 108 58.3
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 9.6e-23 111.3 70 78.6
RcHm_v2.0_Chr3g0495421 Rosa chinensis HOM05D003462 ORTHO05D003946 9.6e-23 111.3 116 56.9
Cre06.g267700 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 1.3e-22 110.9 164 42.1
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 3.1e-21 106.3 70 78.6
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 5.3e-21 105.5 163 41.1
HanXRQChr09g0240321 Helianthus annuus HOM05D003462 ORTHO05D003946 7.6e-20 101.7 85 61.2
HanXRQChr09g0240811 Helianthus annuus HOM05D003462 ORTHO05D003946 5.0e-19 99.0 85 60.0
RcHm_v2.0_Chr6g0264331 Rosa chinensis HOM05D003462 ORTHO05D003946 7.2e-18 95.1 57 84.2
ECA236G4192 Erigeron canadensis HOM05D003462 ORTHO05D003946 2.1e-17 93.6 61 77.0
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 1.9e-15 87.0 63 74.6
ATR0559G066 Amborella trichopoda HOM05D003462 ORTHO05D003946 7.4e-15 85.1 83 51.8
CBR_g31190 Chara braunii HOM05D003462 ORTHO05D003946 8.2e-14 81.6 52 78.8
FvH4_5g13112 Fragaria vesca HOM05D003462 ORTHO05D003946 8.2e-14 81.6 57 70.2
Ca_29357_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 1.1e-13 81.3 142 34.5
ECA233G4583 Erigeron canadensis HOM05D003462 ORTHO05D003946 4.5e-12 75.9 144 38.2
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 1.0e-11 74.7 49 71.4
COL.COLO4_01124 Corchorus olitorius HOM05D003462 ORTHO05D003946 5.0e-11 72.4 140 35.7
ECA233G4504 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.9e-10 70.5 49 69.4
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 9.4e-10 68.2 127 40.9
Medtr4g130550 Medicago truncatula HOM05D003462 ORTHO05D003946 1.2e-09 67.8 123 35.8
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 2.1e-09 67.0 38 92.1
PRCOL_00001689 Prasinoderma coloniale HOM05D003462 ORTHO05D003946 1.8e-08 63.9 172 31.4
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 1.1e-07 61.2 36 86.1


User provided reference genes

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