Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035859 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D005105 9.7e-104 380.2 195 100.0
Hma1.2p1_0065F.1_g035150 Hydrangea macrophylla HOM05D001361 ORTHO05D005105 2.5e-43 179.5 115 80.0
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 4.3e-43 178.7 112 83.0
CiPaw.05G107400 Carya illinoinensis HOM05D001361 ORTHO05D005105 4.7e-42 175.3 112 78.6
Cfa009384 Carpinus fangiana HOM05D001361 ORTHO05D005105 6.2e-42 174.9 112 78.6
Rhsim12G0024000 Rhododendron simsii HOM05D001361 ORTHO05D005105 8.1e-42 174.5 118 75.4
Cc11_g17160 Coffea canephora HOM05D001361 ORTHO05D005105 9.9e-40 167.5 113 77.0
MSTRG.486 Avicennia marina HOM05D001361 ORTHO05D005105 2.2e-39 166.4 112 71.4
MSTRG.8019 Avicennia marina HOM05D001361 ORTHO05D005105 2.9e-39 166.0 112 72.3
Atru.chr11.2355 Acer truncatum HOM05D001361 ORTHO05D005105 1.4e-38 163.7 113 73.5
Duzib251G0004 Durio zibethinus HOM05D001361 ORTHO05D005105 1.4e-38 163.7 112 74.1
Thecc.02G202500 Theobroma cacao HOM05D001361 ORTHO05D005105 1.9e-38 163.3 112 73.2
TAR629G2391 Trochodendron aralioides HOM05D001361 ORTHO05D005105 1.9e-38 163.3 113 73.5
Actinidia08055 Actinidia chinensis HOM05D001361 ORTHO05D005105 4.1e-38 162.2 112 73.2
Manes.12G008800 Manihot esculenta HOM05D001361 ORTHO05D005105 4.1e-38 162.2 112 73.2
Potri.003G169200 Populus trichocarpa HOM05D001361 ORTHO05D005105 5.4e-38 161.8 115 70.4
Actinidia30631 Actinidia chinensis HOM05D001361 ORTHO05D005105 7.1e-38 161.4 112 72.3
HanXRQChr12g0361331 Helianthus annuus HOM05D001361 ORTHO05D005105 9.2e-38 161.0 112 76.8
SGA_v2.0_scaffold7G04048 Striga asiatica HOM05D001361 ORTHO05D005105 9.2e-38 161.0 112 73.2
Potri.001G058700 Populus trichocarpa HOM05D001361 ORTHO05D005105 1.2e-37 160.6 115 71.3
SalBow1G2500 Salvia bowleyana HOM05D001361 ORTHO05D005105 1.6e-37 160.2 112 70.5
Dinv17585 Davidia involucrata HOM05D001361 ORTHO05D005105 2.1e-37 159.8 105 77.1
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 2.7e-37 159.5 112 75.0
Duzib248G0082 Durio zibethinus HOM05D001361 ORTHO05D005105 7.8e-37 157.9 112 71.4
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 7.8e-37 157.9 115 69.6
TAR371G0443 Trochodendron aralioides HOM05D001361 ORTHO05D005105 2.3e-36 156.4 113 70.8
TWI75G0976 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 3.9e-36 155.6 114 65.8
SGA_v2.0_scaffold114G31917 Striga asiatica HOM05D001361 ORTHO05D005105 5.1e-36 155.2 112 70.5
Carub.0001s2579 Capsella rubella HOM05D001361 ORTHO05D005105 6.6e-36 154.8 112 68.8
Oeu006513.1 Olea europaea HOM05D001361 ORTHO05D005105 1.1e-35 154.1 112 67.0
vmacro01051 Vaccinium macrocarpon HOM05D001361 ORTHO05D005105 1.1e-35 154.1 135 66.7
AL1G40660 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 1.5e-35 153.7 112 68.8
HanXRQChr05g0128771 Helianthus annuus HOM05D001361 ORTHO05D005105 2.5e-35 152.9 113 73.5
BcaC01g01627 Brassica carinata HOM05D001361 ORTHO05D005105 4.3e-35 152.1 112 68.8
A08p26450 Brassica napus HOM05D001361 ORTHO05D005105 4.3e-35 152.1 112 68.8
BolC3t19653H Brassica oleracea HOM05D001361 ORTHO05D005105 4.3e-35 152.1 112 68.8
BraA08t34597Z Brassica rapa HOM05D001361 ORTHO05D005105 4.3e-35 152.1 112 68.8
Nitab4.5_0008235g0020 Nicotiana tabacum HOM05D001361 ORTHO05D005105 4.3e-35 152.1 112 72.3
EL10Ac6g13534 Beta vulgaris HOM05D001361 ORTHO05D005105 5.6e-35 151.8 112 64.3
BcaB03g12068 Brassica carinata HOM05D001361 ORTHO05D005105 5.6e-35 151.8 112 68.8
DCAR_024667 Daucus carota HOM05D001361 ORTHO05D005105 5.6e-35 151.8 112 68.8
Hund25479 Selenicereus undatus HOM05D001361 ORTHO05D005105 7.3e-35 151.4 112 67.0
Cpa.g.sc200.23 Carica papaya HOM05D001361 ORTHO05D005105 9.6e-35 151.0 113 68.1
C03p73600 Brassica napus HOM05D001361 ORTHO05D005105 1.2e-34 150.6 112 67.9
Nitab4.5_0010664g0010 Nicotiana tabacum HOM05D001361 ORTHO05D005105 1.2e-34 150.6 112 72.3
Solyc05g015820.4 Solanum lycopersicum HOM05D001361 ORTHO05D005105 1.6e-34 150.2 112 71.4
Sopen05g011440 Solanum pennellii HOM05D001361 ORTHO05D005105 1.6e-34 150.2 112 71.4
PGR102G1867 Punica granatum HOM05D001361 ORTHO05D005105 2.1e-34 149.8 112 67.9
Aa31LG7G9940 Aethionema arabicum HOM05D001361 ORTHO05D005105 3.6e-34 149.1 112 66.1
AT1G24267 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 3.6e-34 149.1 112 66.1
CAN.G1358.16 Capsicum annuum HOM05D001361 ORTHO05D005105 4.7e-34 148.7 112 71.4
Lsat_1_v5_gn_3_31340 Lactuca sativa HOM05D001361 ORTHO05D005105 4.7e-34 148.7 113 70.8
Migut.K00986 Erythranthe guttata HOM05D001361 ORTHO05D005105 6.2e-34 148.3 114 68.4
TWI36G1404 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 6.2e-34 148.3 114 65.8
EL10Ac6g15295 Beta vulgaris HOM05D001361 ORTHO05D005105 8.1e-34 147.9 112 63.4
ClCG06G002090 Citrullus lanatus HOM05D001361 ORTHO05D005105 1.8e-33 146.7 112 67.0
Thhalv10008045m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 1.8e-33 146.7 112 64.3
Nn4g22268 Nelumbo nucifera HOM05D001361 ORTHO05D005105 2.4e-33 146.4 116 67.2
THA.LOC104825490 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 2.4e-33 146.4 112 65.2
Eucgr.B03519 Eucalyptus grandis HOM05D001361 ORTHO05D005105 3.1e-33 146.0 112 68.8
Sp1g23500 Schrenkiella parvula HOM05D001361 ORTHO05D005105 3.1e-33 146.0 112 65.2
BcaC05g26733 Brassica carinata HOM05D001361 ORTHO05D005105 9.0e-33 144.4 112 64.3
Gohir.D04G187700 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.2e-32 144.1 112 67.0
Gorai.012G180700 Gossypium raimondii HOM05D001361 ORTHO05D005105 1.2e-32 144.1 112 67.0
Sc04g0010260 Simmondsia chinensis HOM05D001361 ORTHO05D005105 1.2e-32 144.1 112 64.3
GSVIVG01010524001 Vitis vinifera HOM05D001361 ORTHO05D005105 1.2e-32 144.1 112 67.0
Prupe.1G223300 Prunus persica HOM05D001361 ORTHO05D005105 2.6e-32 142.9 112 67.0
A09p38680 Brassica napus HOM05D001361 ORTHO05D005105 5.8e-32 141.7 112 61.6
BraA09t39376Z Brassica rapa HOM05D001361 ORTHO05D005105 5.8e-32 141.7 112 61.6
MD16G1122300 Malus domestica HOM05D001361 ORTHO05D005105 5.8e-32 141.7 112 65.2
Peaxi162Scf00023g02226 Petunia axillaris HOM05D001361 ORTHO05D005105 5.8e-32 141.7 113 69.0
THA.LOC104807139 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 5.8e-32 141.7 112 62.5
CDE02G3199 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 7.6e-32 141.4 114 65.8
AL1G40670 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 1.3e-31 140.6 112 62.5
CANSAT01G0548 Cannabis sativa HOM05D001361 ORTHO05D005105 1.3e-31 140.6 112 65.2
Thhalv10008078m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 1.3e-31 140.6 112 61.6
Gohir.A04G141200 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.3e-31 140.6 112 66.1
Actinidia39801 Actinidia chinensis HOM05D001361 ORTHO05D005105 1.7e-31 140.2 112 66.1
Duzib268G1250 Durio zibethinus HOM05D001361 ORTHO05D005105 2.2e-31 139.8 112 65.2
AT1G24265 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 2.9e-31 139.4 112 61.6
HanXRQChr06g0174761 Helianthus annuus HOM05D001361 ORTHO05D005105 3.8e-31 139.0 113 67.3
Glyma.18G283800 Glycine max HOM05D001361 ORTHO05D005105 6.4e-31 138.3 113 61.9
Gohir.D02G146800 Gossypium hirsutum HOM05D001361 ORTHO05D005105 6.4e-31 138.3 112 63.4
BcaC05g26734 Brassica carinata HOM05D001361 ORTHO05D005105 1.1e-30 137.5 113 64.6
Gohir.A03G124400 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.1e-30 137.5 112 61.6
Carub.0001s2580 Capsella rubella HOM05D001361 ORTHO05D005105 1.4e-30 137.1 112 61.6
Gorai.005G164400 Gossypium raimondii HOM05D001361 ORTHO05D005105 1.4e-30 137.1 112 63.4
Sp1g23510 Schrenkiella parvula HOM05D001361 ORTHO05D005105 1.4e-30 137.1 113 68.1
Nn3g16410 Nelumbo nucifera HOM05D001361 ORTHO05D005105 1.9e-30 136.7 117 64.1
C05p25950 Brassica napus HOM05D001361 ORTHO05D005105 2.4e-30 136.3 112 60.7
arahy.Tifrunner.gnm1.ann1.M9HGBQ Arachis hypogaea HOM05D001361 ORTHO05D005105 4.2e-30 135.6 112 59.8
arahy.Tifrunner.gnm1.ann1.WMQ7N5 Arachis hypogaea HOM05D001361 ORTHO05D005105 4.2e-30 135.6 112 59.8
CARHR026830 Cardamine hirsuta HOM05D001361 ORTHO05D005105 4.2e-30 135.6 112 58.9
Aa31LG7G9930 Aethionema arabicum HOM05D001361 ORTHO05D005105 5.4e-30 135.2 112 60.7
Glyma.08G259700 Glycine max HOM05D001361 ORTHO05D005105 5.4e-30 135.2 113 61.1
C05p25960 Brassica napus HOM05D001361 ORTHO05D005105 7.1e-30 134.8 113 67.3
BolC5t31315H Brassica oleracea HOM05D001361 ORTHO05D005105 7.1e-30 134.8 113 67.3
Peaxi162Scf00128g01540 Petunia axillaris HOM05D001361 ORTHO05D005105 7.1e-30 134.8 112 64.3
A09p38670 Brassica napus HOM05D001361 ORTHO05D005105 9.3e-30 134.4 113 67.3
CDE05G1789 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 9.3e-30 134.4 114 61.4
BcaC05g26539 Brassica carinata HOM05D001361 ORTHO05D005105 1.6e-29 133.7 112 58.9
BolC5t31314H Brassica oleracea HOM05D001361 ORTHO05D005105 1.6e-29 133.7 112 58.9
Ah.02g130800 Amaranthus hybridus HOM05D001361 ORTHO05D005105 2.1e-29 133.3 112 59.8
Phvul.008G017700 Phaseolus vulgaris HOM05D001361 ORTHO05D005105 2.7e-29 132.9 113 61.9
CDE05G0317 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 3.5e-29 132.5 114 60.5
BcaC05g26540 Brassica carinata HOM05D001361 ORTHO05D005105 7.8e-29 131.3 117 65.8
BraA09t39375Z Brassica rapa HOM05D001361 ORTHO05D005105 7.8e-29 131.3 113 66.4
Ca_07127_v3 Cicer arietinum L. HOM05D001361 ORTHO05D005105 2.3e-28 129.8 112 60.7
MD13G1122000 Malus domestica HOM05D001361 ORTHO05D005105 2.3e-28 129.8 113 59.3
RcHm_v2.0_Chr4g0429881 Rosa chinensis HOM05D001361 ORTHO05D005105 3.0e-28 129.4 113 62.8
Lalb_Chr17g0336401 Lupinus albus HOM05D001361 ORTHO05D005105 1.5e-27 127.1 112 56.2
BcaB03g12069 Brassica carinata HOM05D001361 ORTHO05D005105 5.6e-27 125.2 113 61.9
CARHR026840 Cardamine hirsuta HOM05D001361 ORTHO05D005105 7.3e-27 124.8 112 57.1
FAN17G0717 Fragaria x ananassa HOM05D001361 ORTHO05D005105 2.8e-26 122.9 113 58.4
HPP92_008062 Vanilla planifolia HOM05D001361 ORTHO05D005105 3.6e-26 122.5 113 56.6
Lj6A829G28 Lonicera japonica HOM05D001361 ORTHO05D005105 4.8e-26 122.1 112 58.9
Sabra01G0042200 Salix brachista HOM05D001361 ORTHO05D005105 4.8e-26 122.1 188 42.6
Lalb_Chr10g0092051 Lupinus albus HOM05D001361 ORTHO05D005105 6.2e-26 121.7 112 57.1
FAN07G0196 Fragaria x ananassa HOM05D001361 ORTHO05D005105 3.1e-25 119.4 113 57.5
FvH4_4g23490 Fragaria vesca HOM05D001361 ORTHO05D005105 5.3e-25 118.6 113 56.6
FAN12G2218 Fragaria x ananassa HOM05D001361 ORTHO05D005105 1.5e-24 117.1 113 55.8
Aqoxy5G03301 Aquilegia oxysepala HOM05D001361 ORTHO05D005105 3.4e-24 115.9 113 54.9
Psat3g188120 Pisum sativum HOM05D001361 ORTHO05D005105 4.5e-24 115.5 112 56.2
ECA246G4360 Erigeron canadensis HOM05D001361 ORTHO05D005105 5.8e-24 115.2 182 43.4
Lj5g0005237 Lotus japonicus HOM05D001361 ORTHO05D005105 5.8e-24 115.2 112 56.2
PSO017G4710 Papaver somniferum HOM05D001361 ORTHO05D005105 7.1e-22 108.2 117 55.6
TPR.G2940 Trifolium pratense HOM05D001361 ORTHO05D005105 7.1e-22 108.2 112 50.0
PSO478G4435 Papaver somniferum HOM05D001361 ORTHO05D005105 1.2e-21 107.5 117 55.6
unitig_747.g21121 Utricularia gibba HOM05D001361 ORTHO05D005105 3.5e-21 105.9 97 56.7
SGA_v2.0_scaffold258G45786 Striga asiatica HOM05D001361 ORTHO05D005105 6.0e-21 105.1 103 55.3
Ciclev10031908m.g Citrus clementina HOM05D001361 ORTHO05D005105 3.0e-20 102.8 112 51.8
SalBow1G0997 Salvia bowleyana HOM05D001361 ORTHO05D005105 7.4e-19 98.2 69 71.0
CDE06G0592 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 9.6e-19 97.8 87 60.9
Medtr7g022230 Medicago truncatula HOM05D001361 ORTHO05D005105 9.6e-19 97.8 114 48.2
AUR62028903 Chenopodium quinoa HOM05D001361 ORTHO05D005105 8.1e-18 94.7 122 43.4
MBI11_g05341_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D005105 9.9e-16 87.8 97 49.5
QL03p029172 Quercus lobata HOM05D001361 ORTHO05D005105 3.2e-14 82.8 122 41.0
Oeu004465.2 Olea europaea HOM05D001361 ORTHO05D005105 1.3e-12 77.4 255 31.0
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 2.3e-12 76.6 47 76.6
Zm00001eb285600 Zea mays HOM05D001361 ORTHO05D005105 1.5e-11 73.9 112 42.0
Zm00001eb334060 Zea mays HOM05D001361 ORTHO05D005105 2.5e-11 73.2 112 43.8
Manes.13G009200 Manihot esculenta HOM05D001361 ORTHO05D005105 1.6e-10 70.5 52 69.2
Os01g0100800 Oryza sativa ssp. japonica HOM05D001361 ORTHO05D005105 2.8e-10 69.7 113 42.5
QL03p029156 Quercus lobata HOM05D001361 ORTHO05D005105 6.2e-10 68.6 44 77.3
QL03p051832 Quercus lobata HOM05D001361 ORTHO05D005105 6.2e-10 68.6 124 38.7
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 8.2e-10 68.2 99 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2868 Anthoceros agrestis HOM05D001361 ORTHO05D002529 1.1e-09 67.8 116 37.1
Os05g0103700 Oryza sativa ssp. japonica HOM05D001361 ORTHO05D005105 1.8e-09 67.0 112 40.2
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.4e-09 66.6 47 66.0
MELO3C022320.2 Cucumis melo HOM05D001361 ORTHO05D005105 1.2e-08 64.3 54 59.3
CsaV3_6G008160 Cucumis sativus L. HOM05D001361 ORTHO05D005105 1.2e-08 64.3 50 60.0
Zm00001eb356190 Zea mays HOM05D001361 ORTHO05D005105 3.4e-08 62.8 114 36.0
MBI07_g21496_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D005105 7.6e-08 61.6 50 58.0
SMO334G0094 Selaginella moellendorffii HOM05D001361 ORTHO05D002529 3.8e-07 59.3 112 37.5
COL.COLO4_20443 Corchorus olitorius HOM05D001361 ORTHO05D005105 6.5e-07 58.5 50 54.0
Mapoly0031s0188 Marchantia polymorpha HOM05D001361 ORTHO05D002529 6.5e-07 58.5 112 38.4
Os01g0112300 Oryza sativa ssp. japonica HOM05D001361 ORTHO05D005105 6.5e-07 58.5 105 40.0
Sed0016155 Sechium edule HOM05D001361 ORTHO05D005105 1.1e-06 57.8 50 58.0
CDE09G0127 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 1.4e-06 57.4 112 35.7
MBI04_g10405_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D002529 3.2e-06 56.2 114 34.2
Phvul.002G065900 Phaseolus vulgaris HOM05D001361 ORTHO05D002529 4.2e-06 55.8 112 30.4
CDE02G3302 Ceratophyllum demersum HOM05D001361 ORTHO05D002529 7.1e-06 55.1 112 34.8
Lalb_Chr04g0256311 Lupinus albus HOM05D001361 ORTHO05D002529 9.3e-06 54.7 112 30.4
Zm00001eb282900 Zea mays HOM05D001361 ORTHO05D002529 9.3e-06 54.7 111 31.5


User provided reference genes

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