Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 3.8e-193 678.3 425 100.0
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 3.8e-193 678.3 425 100.0
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 4.9e-92 342.4 381 68.0
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 2.3e-89 333.6 349 69.6
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 5.1e-81 305.8 385 61.0
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 2.0e-77 293.9 400 50.0
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 2.6e-77 293.5 384 61.2
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 2.2e-76 290.4 400 42.0
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 2.1e-74 283.9 376 58.0
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 5.8e-69 265.8 371 41.8
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 9.6e-64 248.4 382 55.0
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 1.3e-63 248.1 365 58.9
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 1.4e-62 244.6 380 53.2
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 6.9e-62 242.3 380 43.9
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 2.0e-61 240.7 398 36.7
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 1.9e-59 234.2 376 49.7
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 5.4e-59 232.6 393 45.8
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 1.6e-58 231.1 313 61.7
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 1.6e-58 231.1 376 54.8
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 2.1e-58 230.7 396 52.3
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 4.6e-58 229.6 390 51.0
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 7.9e-58 228.8 386 50.3
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 2.3e-57 227.3 388 36.6
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 3.0e-57 226.9 373 52.0
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 8.7e-57 225.3 396 54.0
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 5.6e-56 222.6 345 53.3
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 6.2e-55 219.2 376 53.5
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 1.1e-54 218.4 375 54.7
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 1.4e-54 218.0 378 51.6
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 1.8e-54 217.6 373 51.2
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 3.1e-54 216.9 364 53.6
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 3.1e-54 216.9 377 51.5
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 1.5e-53 214.5 388 40.2
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 4.5e-53 213.0 368 53.8
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 1.7e-52 211.1 398 52.0
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 2.9e-52 210.3 389 50.9
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 3.8e-52 209.9 395 40.0
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 3.2e-51 206.8 384 37.5
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 7.1e-51 205.7 385 37.7
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 7.9e-50 202.2 370 43.2
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 3.0e-49 200.3 379 50.1
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 3.0e-49 200.3 379 50.9
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 6.7e-49 199.1 383 48.6
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 1.1e-48 198.4 377 48.8
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 2.5e-48 197.2 402 47.5
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 2.5e-48 197.2 395 47.1
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 3.3e-48 196.8 275 58.9
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 3.7e-47 193.4 317 52.4
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 3.7e-47 193.4 375 45.9
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 6.2e-47 192.6 307 52.8
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 6.2e-47 192.6 375 45.3
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 1.8e-46 191.0 302 57.6
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 3.1e-46 190.3 375 44.3
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 7.9e-42 175.6 284 59.2
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 1.8e-41 174.5 368 50.0
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 8.2e-39 165.6 291 59.1
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 7.7e-37 159.1 369 45.5
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 1.3e-36 158.3 287 51.9
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 1.4e-35 154.8 372 41.7
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 5.5e-35 152.9 371 44.7
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 9.4e-35 152.1 368 47.6
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 1.6e-34 151.4 369 46.9
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 1.6e-34 151.4 378 43.1
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 1.4e-33 148.3 371 43.4
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 2.0e-32 144.4 273 31.9
ECA232G0955 Erigeron canadensis HOM05D007884 ORTHO05D009968 2.5e-32 144.1 290 51.0
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 5.7e-32 142.9 374 43.0
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 1.3e-31 141.7 205 42.0
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 1.7e-31 141.4 257 57.6
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 1.4e-30 138.3 387 26.1
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 1.4e-30 138.3 387 26.1
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 2.4e-30 137.5 389 28.5
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 2.4e-30 137.5 314 30.3
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 2.5e-27 127.5 307 28.3
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 7.9e-26 122.5 387 25.8
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 8.8e-25 119.0 378 41.5
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 7.0e-22 109.4 312 26.3
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 4.5e-21 106.7 316 48.1
CAN.G6574.1 Capsicum annuum HOM05D007884 ORTHO05D009968 3.6e-18 97.1 239 56.5
SEGI_26452 Sequoiadendron giganteum HOM05D007884 ORTHO05D009968 5.0e-12 76.6 98 35.7
Hund17562 Selenicereus undatus HOM05D007884 ORTHO05D009968 1.2e-08 65.5 60 46.7


User provided reference genes

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