Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035833 Camellia sinensis var. sinensis HOM05D001589 ORTHO05D109040 2.1e-97 359.0 178 100.0
vmacro19589 Vaccinium macrocarpon HOM05D001589 ORTHO05D001529 3.3e-26 122.5 110 62.7
Actinidia29268 Actinidia chinensis HOM05D001589 ORTHO05D001529 1.2e-20 104.0 120 57.5
CSS0001420 Camellia sinensis var. sinensis HOM05D001589 ORTHO05D001529 8.8e-19 97.8 111 55.9
Rhsim05G0095100 Rhododendron simsii HOM05D001589 ORTHO05D001529 2.0e-18 96.7 113 56.6
CSS0037558 Camellia sinensis var. sinensis HOM05D001589 ORTHO05D001529 5.7e-18 95.1 111 55.0
Hma1.2p1_0435F.1_g152540 Hydrangea macrophylla HOM05D001589 ORTHO05D001529 9.7e-18 94.4 117 53.8
Dinv08957 Davidia involucrata HOM05D001589 ORTHO05D001529 1.3e-17 94.0 111 58.6
MD10G1058100 Malus domestica HOM05D001589 ORTHO05D001529 1.4e-16 90.5 116 48.3
MD05G1050500 Malus domestica HOM05D001589 ORTHO05D001529 4.5e-15 85.5 115 46.1
PGSC0003DMG400026788 Solanum tuberosum HOM05D001589 ORTHO05D001529 4.5e-15 85.5 107 53.3
TAR362G0638 Trochodendron aralioides HOM05D001589 ORTHO05D001529 2.2e-14 83.2 116 47.4
COL.COLO4_17849 Corchorus olitorius HOM05D001589 ORTHO05D001529 6.5e-14 81.6 98 52.0
Prupe.8G076900 Prunus persica HOM05D001589 ORTHO05D001529 1.1e-13 80.9 116 46.6
QL11p027586 Quercus lobata HOM05D001589 ORTHO05D001529 1.1e-13 80.9 109 47.7
Thecc.02G037100 Theobroma cacao HOM05D001589 ORTHO05D001529 1.1e-13 80.9 124 43.5
RcHm_v2.0_Chr6g0269221 Rosa chinensis HOM05D001589 ORTHO05D001529 1.4e-13 80.5 116 49.1
Cc02_g20490 Coffea canephora HOM05D001589 ORTHO05D001529 1.9e-13 80.1 113 46.0
FAN24G0377 Fragaria x ananassa HOM05D001589 ORTHO05D001529 2.5e-13 79.7 121 44.6
Solyc10g047930.2 Solanum lycopersicum HOM05D001589 ORTHO05D001529 3.2e-13 79.3 107 51.4
CsaV3_7G007300 Cucumis sativus L. HOM05D001589 ORTHO05D001529 5.5e-13 78.6 107 48.6
FAN15G1176 Fragaria x ananassa HOM05D001589 ORTHO05D001529 5.5e-13 78.6 122 43.4
Migut.B00511 Erythranthe guttata HOM05D001589 ORTHO05D001529 7.2e-13 78.2 109 52.3
Haze_10372 Corylus avellana HOM05D001589 ORTHO05D001529 9.4e-13 77.8 111 49.5
FvH4_2g11010 Fragaria vesca HOM05D001589 ORTHO05D001529 9.4e-13 77.8 75 56.0
CiPaw.05G025700 Carya illinoinensis HOM05D001589 ORTHO05D001529 1.2e-12 77.4 115 49.6
Potri.009G080700 Populus trichocarpa HOM05D001589 ORTHO05D001529 1.2e-12 77.4 72 54.2
Sabra16G0179000 Salix brachista HOM05D001589 ORTHO05D001529 1.2e-12 77.4 112 41.1
Eucgr.G01088 Eucalyptus grandis HOM05D001589 ORTHO05D001529 1.6e-12 77.0 45 86.7
Eucgr.G01099 Eucalyptus grandis HOM05D001589 ORTHO05D001529 1.6e-12 77.0 45 86.7
Gorai.005G261900 Gossypium raimondii HOM05D001589 ORTHO05D001529 1.6e-12 77.0 66 65.2
Gohir.A03G212400 Gossypium hirsutum HOM05D001589 ORTHO05D001529 2.1e-12 76.6 66 66.7
Gohir.D02G233900 Gossypium hirsutum HOM05D001589 ORTHO05D001529 2.1e-12 76.6 66 66.7
Nitab4.5_0004008g0050 Nicotiana tabacum HOM05D001589 ORTHO05D001529 2.1e-12 76.6 108 50.0
Sopen10g018890 Solanum pennellii HOM05D001589 ORTHO05D001529 2.1e-12 76.6 107 47.7
Atru.chr6.1382 Acer truncatum HOM05D001589 ORTHO05D001529 2.7e-12 76.3 111 45.0
Cpa.g.sc1965.1 Carica papaya HOM05D001589 ORTHO05D001529 2.7e-12 76.3 112 47.3
Potri.001G286500 Populus trichocarpa HOM05D001589 ORTHO05D001529 2.7e-12 76.3 112 42.0
CAN.G848.3 Capsicum annuum HOM05D001589 ORTHO05D001529 3.6e-12 75.9 107 51.4
Nn3g21176 Nelumbo nucifera HOM05D001589 ORTHO05D001529 3.6e-12 75.9 117 48.7
Duzib052G1192 Durio zibethinus HOM05D001589 ORTHO05D001529 6.1e-12 75.1 98 50.0
CANSAT54G1509 Cannabis sativa HOM05D001589 ORTHO05D001529 1.4e-11 73.9 123 48.8
Eucgr.G01101 Eucalyptus grandis HOM05D001589 ORTHO05D001529 1.4e-11 73.9 69 63.8
Gohir.D12G040900 Gossypium hirsutum HOM05D001589 ORTHO05D001529 2.3e-11 73.2 109 45.0
Gorai.008G042700 Gossypium raimondii HOM05D001589 ORTHO05D001529 2.3e-11 73.2 109 45.0
Manes.07G048000 Manihot esculenta HOM05D001589 ORTHO05D001529 2.3e-11 73.2 115 42.6
Gohir.A12G031400 Gossypium hirsutum HOM05D001589 ORTHO05D001529 3.0e-11 72.8 63 61.9
Sed0000022 Sechium edule HOM05D001589 ORTHO05D001529 3.0e-11 72.8 115 45.2
THA.LOC104813040 Tarenaya hassleriana HOM05D001589 ORTHO05D001529 3.0e-11 72.8 62 64.5
Ciclev10029224m.g Citrus clementina HOM05D001589 ORTHO05D001529 3.9e-11 72.4 123 42.3
arahy.Tifrunner.gnm1.ann1.2I8X29 Arachis hypogaea HOM05D001589 ORTHO05D001529 6.7e-11 71.6 109 46.8
Ca_18433_v3 Cicer arietinum L. HOM05D001589 ORTHO05D001529 8.8e-11 71.2 47 68.1
Phvul.006G198700 Phaseolus vulgaris HOM05D001589 ORTHO05D001529 8.8e-11 71.2 71 60.6
Glyma.13G253800 Glycine max HOM05D001589 ORTHO05D001529 1.1e-10 70.9 85 48.2
VMungo0540G2138 Vigna mungo HOM05D001589 ORTHO05D001529 1.1e-10 70.9 71 59.2
arahy.Tifrunner.gnm1.ann1.3ZC5FT Arachis hypogaea HOM05D001589 ORTHO05D001529 1.5e-10 70.5 77 55.8
MSTRG.20247 Avicennia marina HOM05D001589 ORTHO05D001529 1.5e-10 70.5 110 48.2
Duzib132G0572 Durio zibethinus HOM05D001589 ORTHO05D001529 1.5e-10 70.5 51 70.6
Medtr4g092800 Medicago truncatula HOM05D001589 ORTHO05D001529 2.6e-10 69.7 72 55.6
Eucgr.L01759 Eucalyptus grandis HOM05D001589 ORTHO05D001529 4.4e-10 68.9 89 53.9
Glyma.15G061100 Glycine max HOM05D001589 ORTHO05D001529 4.4e-10 68.9 43 81.4
TPR.G16872 Trifolium pratense HOM05D001589 ORTHO05D001529 4.4e-10 68.9 101 50.5
Lj4g0023893 Lotus japonicus HOM05D001589 ORTHO05D001529 5.7e-10 68.6 76 55.3
TWI59G1226 Tripterygium wilfordii HOM05D001589 ORTHO05D001529 5.7e-10 68.6 44 75.0
CARHR228610 Cardamine hirsuta HOM05D001589 ORTHO05D001529 7.4e-10 68.2 63 61.9
MBI19_g21634_MAGBIO Magnolia biondii HOM05D001589 ORTHO05D001529 7.4e-10 68.2 65 61.5
Lsat_1_v5_gn_7_83200 Lactuca sativa HOM05D001589 ORTHO05D001529 9.7e-10 67.8 91 49.5
Lalb_Chr16g0383141 Lupinus albus HOM05D001589 ORTHO05D001529 9.7e-10 67.8 109 45.0
Peaxi162Scf00299g00231 Petunia axillaris HOM05D001589 ORTHO05D001529 9.7e-10 67.8 107 50.5
Psat7g103960 Pisum sativum HOM05D001589 ORTHO05D001529 9.7e-10 67.8 58 63.8
MELO3C018569.2 Cucumis melo HOM05D001589 ORTHO05D001529 2.2e-09 66.6 107 43.9
arahy.Tifrunner.gnm1.ann1.2GZ3LH Arachis hypogaea HOM05D001826 ORTHO05D007448 3.7e-09 65.9 107 44.9
unitig_0.g889 Utricularia gibba HOM05D001589 ORTHO05D001529 4.8e-09 65.5 110 42.7
ClCG09G016380 Citrullus lanatus HOM05D001589 ORTHO05D001529 6.3e-09 65.1 42 73.8
BcaC06g30681 Brassica carinata HOM05D001589 ORTHO05D001529 8.2e-09 64.7 88 45.5
A03p52990 Brassica napus HOM05D001589 ORTHO05D001529 8.2e-09 64.7 45 71.1
Thhalv10026236m.g Eutrema salsugineum HOM05D001589 ORTHO05D001529 8.2e-09 64.7 60 61.7
Sp7g20000 Schrenkiella parvula HOM05D001589 ORTHO05D001529 8.2e-09 64.7 60 61.7
PGR042G2018 Punica granatum HOM05D001589 ORTHO05D001529 1.1e-08 64.3 43 74.4
BcaNung02252 Brassica carinata HOM05D001589 ORTHO05D001529 1.4e-08 63.9 72 54.2
Aqoxy2G03188 Aquilegia oxysepala HOM05D001589 ORTHO05D001529 1.8e-08 63.5 105 42.9
BolC1t01540H Brassica oleracea HOM05D001589 ORTHO05D001529 1.8e-08 63.5 104 47.1
C07p51420 Brassica napus HOM05D001589 ORTHO05D001529 2.4e-08 63.2 68 54.4
AT4G04800 Arabidopsis thaliana HOM05D001589 ORTHO05D001529 3.1e-08 62.8 37 78.4
BcaC09g51194 Brassica carinata HOM05D001589 ORTHO05D001529 3.1e-08 62.8 102 46.1
BolC7t45639H Brassica oleracea HOM05D001589 ORTHO05D001529 3.1e-08 62.8 68 55.9
Carub.0007s1952 Capsella rubella HOM05D001589 ORTHO05D001529 3.1e-08 62.8 60 56.7
FvH4_4g13910 Fragaria vesca HOM05D001589 ORTHO05D001529 3.1e-08 62.8 35 85.7
FAN07G1883 Fragaria x ananassa HOM05D001589 ORTHO05D001529 3.1e-08 62.8 35 85.7
FAN12G1291 Fragaria x ananassa HOM05D001589 ORTHO05D001529 3.1e-08 62.8 35 85.7
Nitab4.5_0009020g0050 Nicotiana tabacum HOM05D001589 ORTHO05D001529 3.1e-08 62.8 60 61.7
BraA03t14372Z Brassica rapa HOM05D001589 ORTHO05D001529 4.1e-08 62.4 45 68.9
Carub.0006s3272 Capsella rubella HOM05D001589 ORTHO05D001529 4.1e-08 62.4 37 75.7
CDE05G2318 Ceratophyllum demersum HOM05D001589 ORTHO05D001529 4.1e-08 62.4 107 39.3
SGA_v2.0_scaffold342G49413 Striga asiatica HOM05D001589 ORTHO05D001529 5.3e-08 62.0 102 49.0
A01p13160 Brassica napus HOM05D001589 ORTHO05D001529 7.0e-08 61.6 78 51.3
BraA01t01260Z Brassica rapa HOM05D001589 ORTHO05D001529 7.0e-08 61.6 78 51.3
RcHm_v2.0_Chr4g0395581 Rosa chinensis HOM05D001589 ORTHO05D001529 7.0e-08 61.6 35 82.9
RcHm_v2.0_Chr4g0419881 Rosa chinensis HOM05D001589 ORTHO05D001529 7.0e-08 61.6 35 82.9
ATR0626G300 Amborella trichopoda HOM05D001589 ORTHO05D001529 9.1e-08 61.2 32 87.5
CDE11G0716 Ceratophyllum demersum HOM05D001589 ORTHO05D001529 9.1e-08 61.2 66 50.0
Ca_18418_v3 Cicer arietinum L. HOM05D001589 ORTHO05D001529 9.1e-08 61.2 32 84.4
AL7G32050 Arabidopsis lyrata HOM05D001589 ORTHO05D001529 1.2e-07 60.8 53 60.4
CiPaw.01G156800 Carya illinoinensis HOM05D001589 ORTHO05D001529 1.6e-07 60.5 38 68.4
CDE11G1218 Ceratophyllum demersum HOM05D001589 ORTHO05D001529 2.6e-07 59.7 66 48.5
Prupe.1G147300 Prunus persica HOM05D001589 ORTHO05D001529 2.6e-07 59.7 35 77.1
EL10Ac9g22136 Beta vulgaris HOM05D001589 ORTHO05D001529 3.5e-07 59.3 43 69.8
Cfa015541 Carpinus fangiana HOM05D001589 ORTHO05D001529 3.5e-07 59.3 33 78.8
Aa31LG6G3860 Aethionema arabicum HOM05D001589 ORTHO05D001529 4.5e-07 58.9 43 69.8
AT4G21860 Arabidopsis thaliana HOM05D001589 ORTHO05D001529 4.5e-07 58.9 68 55.9
CAN.G504.57 Capsicum annuum HOM05D001589 ORTHO05D001529 4.5e-07 58.9 35 80.0
Cfa004775 Carpinus fangiana HOM05D001589 ORTHO05D001529 4.5e-07 58.9 46 65.2
HanXRQChr08g0227121 Helianthus annuus HOM05D001589 ORTHO05D001529 4.5e-07 58.9 49 65.3
Cfa004774 Carpinus fangiana HOM05D001589 ORTHO05D125369 5.9e-07 58.5 64 53.1
Haze_10371 Corylus avellana HOM05D001589 ORTHO05D001529 5.9e-07 58.5 46 65.2
DCAR_001763 Daucus carota HOM05D001589 ORTHO05D001529 5.9e-07 58.5 32 81.2
AL6G48290 Arabidopsis lyrata HOM05D001589 ORTHO05D001529 7.7e-07 58.2 32 81.2
Oeu044812.1 Olea europaea HOM05D001357 ORTHO05D001224 7.7e-07 58.2 31 87.1
GSVIVG01017852001 Vitis vinifera HOM05D001589 ORTHO05D001529 7.7e-07 58.2 33 81.8
MSTRG.16644 Avicennia marina HOM05D001589 ORTHO05D001529 1.0e-06 57.8 32 81.2
MELO3C006583.2 Cucumis melo HOM05D001589 ORTHO05D001529 1.0e-06 57.8 35 77.1
Thhalv10029054m.g Eutrema salsugineum HOM05D001589 ORTHO05D001529 1.0e-06 57.8 32 78.1
Dinv38352 Davidia involucrata HOM05D001589 ORTHO05D001529 1.3e-06 57.4 33 81.8
Oeu008553.1 Olea europaea HOM05D001589 ORTHO05D001529 1.7e-06 57.0 32 84.4
Sp6g04140 Schrenkiella parvula HOM05D001589 ORTHO05D001529 1.7e-06 57.0 32 78.1
Actinidia40211 Actinidia chinensis HOM05D001589 ORTHO05D001529 2.2e-06 56.6 32 84.4
BcaNung00832 Brassica carinata HOM05D001589 ORTHO05D001529 2.2e-06 56.6 34 73.5
Hma1.2p1_0643F.1_g194480 Hydrangea macrophylla HOM05D001589 ORTHO05D001529 2.2e-06 56.6 35 71.4
Sed0019245 Sechium edule HOM05D001589 ORTHO05D001529 2.2e-06 56.6 35 74.3
AUR62030911 Chenopodium quinoa HOM05D001589 ORTHO05D001529 2.9e-06 56.2 32 78.1
TAR365G0220 Trochodendron aralioides HOM05D001589 ORTHO05D001529 2.9e-06 56.2 33 75.8
HPP92_000390 Vanilla planifolia HOM05D001589 ORTHO05D428944 2.9e-06 56.2 32 81.2
AUR62027070 Chenopodium quinoa HOM05D001589 ORTHO05D001529 3.8e-06 55.8 36 69.4
Cc03_g02760 Coffea canephora HOM05D001589 ORTHO05D001529 3.8e-06 55.8 36 72.2
COL.COLO4_13972 Corchorus olitorius HOM05D001589 ORTHO05D001529 3.8e-06 55.8 32 78.1
PSO302G0045 Papaver somniferum HOM05D001589 ORTHO05D001529 3.8e-06 55.8 110 40.0
Atru.chr4.2701 Acer truncatum HOM05D001589 ORTHO05D001529 5.0e-06 55.5 33 72.7
Actinidia23454 Actinidia chinensis HOM05D001589 ORTHO05D001529 5.0e-06 55.5 33 84.8
Ca_30831_v3 Cicer arietinum L. HOM05D001589 ORTHO05D001529 5.0e-06 55.5 35 71.4
PSO170G4146 Papaver somniferum HOM05D001589 ORTHO05D001529 5.0e-06 55.5 108 38.0
Thecc.04G272100 Theobroma cacao HOM05D001589 ORTHO05D001529 5.0e-06 55.5 32 78.1
unitig_749.g14059 Utricularia gibba HOM05D001589 ORTHO05D001529 5.0e-06 55.5 36 69.4
C01p15860 Brassica napus HOM05D001589 ORTHO05D001529 6.5e-06 55.1 29 86.2
CSS0033799 Camellia sinensis var. sinensis HOM05D001589 ORTHO05D001529 6.5e-06 55.1 32 81.2
CSS0037029 Camellia sinensis var. sinensis HOM05D001589 ORTHO05D001529 6.5e-06 55.1 32 81.2
Pp3c27_120 Physcomitrium patens HOM05D001589 ORTHO05D001529 6.5e-06 55.1 98 40.8
Hund00404 Selenicereus undatus HOM05D001589 ORTHO05D001529 6.5e-06 55.1 75 44.0
Solyc01g106400.3 Solanum lycopersicum HOM05D001589 ORTHO05D001529 6.5e-06 55.1 32 78.1
Sopen01g048770 Solanum pennellii HOM05D001589 ORTHO05D001529 6.5e-06 55.1 32 78.1
HPP92_016049 Vanilla planifolia HOM05D001589 ORTHO05D001529 6.5e-06 55.1 32 75.0
HPP92_028602 Vanilla planifolia HOM05D001589 ORTHO05D001529 6.5e-06 55.1 32 75.0
ClCG05G005570 Citrullus lanatus HOM05D001589 ORTHO05D001529 8.5e-06 54.7 92 39.1
Phvul.006G158300 Phaseolus vulgaris HOM05D001589 ORTHO05D001529 8.5e-06 54.7 33 75.8
PGR031G2396 Punica granatum HOM05D001589 ORTHO05D001529 8.5e-06 54.7 33 69.7
TPR.G18020 Trifolium pratense HOM05D001589 ORTHO05D001529 8.5e-06 54.7 32 75.0
vmacro08241 Vaccinium macrocarpon HOM05D001589 ORTHO05D001529 8.5e-06 54.7 32 78.1


User provided reference genes

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