Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.6e-171 605.9 296 100.0
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 5.5e-167 590.9 309 94.2
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 3.9e-80 302.4 199 74.9
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 1.5e-68 263.8 201 67.2
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 2.0e-68 263.5 206 65.5
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.3e-67 260.8 203 66.0
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 1.7e-67 260.4 207 64.7
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 6.5e-67 258.5 205 65.9
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 8.4e-67 258.1 193 68.4
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.1e-66 257.7 182 72.0
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 5.5e-66 255.4 206 67.5
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.2e-65 254.2 142 88.0
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.6e-65 253.8 180 72.8
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 6.0e-65 251.9 206 65.5
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 1.0e-64 251.1 169 74.0
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.0e-64 251.1 167 71.3
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.0e-64 251.1 142 87.3
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 3.0e-64 249.6 184 69.0
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 6.7e-64 248.4 208 63.5
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 6.7e-64 248.4 180 66.1
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 6.7e-64 248.4 163 74.2
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 8.7e-64 248.1 172 70.9
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.9e-63 246.9 183 67.2
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 3.3e-63 246.1 148 78.4
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 3.3e-63 246.1 203 64.0
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 3.3e-63 246.1 203 61.6
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 9.6e-63 244.6 202 61.9
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 1.3e-62 244.2 203 64.5
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.6e-62 243.8 148 77.7
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.6e-62 243.8 186 66.7
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 2.1e-62 243.4 201 62.2
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 2.1e-62 243.4 148 77.0
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 2.8e-62 243.0 188 65.4
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 2.8e-62 243.0 203 64.0
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 3.7e-62 242.7 202 62.4
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.7e-62 242.7 199 61.3
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 8.2e-62 241.5 181 65.2
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 8.2e-62 241.5 221 57.0
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 8.2e-62 241.5 221 57.0
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.4e-61 240.7 182 62.6
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.8e-61 240.4 221 56.6
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 3.1e-61 239.6 203 63.5
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 4.1e-61 239.2 193 66.3
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 9.0e-61 238.0 186 64.0
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.2e-60 237.7 190 66.3
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 1.2e-60 237.7 166 69.9
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 1.2e-60 237.7 166 69.9
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 2.6e-60 236.5 155 71.6
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 2.6e-60 236.5 143 80.4
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 2.6e-60 236.5 197 64.5
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 5.9e-60 235.3 166 71.1
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.7e-59 233.8 199 61.8
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 3.8e-59 232.6 212 58.5
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 3.8e-59 232.6 155 70.3
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 5.0e-59 232.3 197 60.9
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 8.5e-59 231.5 165 72.1
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 8.5e-59 231.5 155 71.0
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 1.9e-58 230.3 196 60.7
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 4.2e-58 229.2 147 74.1
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 4.2e-58 229.2 184 62.0
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 9.3e-58 228.0 179 61.5
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 1.2e-57 227.6 161 68.9
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 6.1e-57 225.3 165 65.5
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.3e-56 224.2 159 67.3
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 8.7e-56 221.5 148 70.9
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.9e-55 220.3 214 58.4
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.9e-55 220.3 156 68.6
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 2.5e-55 219.9 186 60.8
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 7.4e-55 218.4 162 64.2
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 9.7e-55 218.0 163 65.0
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.3e-54 217.6 155 65.8
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 2.8e-54 216.5 172 60.5
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 6.3e-54 215.3 148 68.2
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 6.3e-54 215.3 205 54.1
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 1.8e-53 213.8 171 59.6
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 2.4e-53 213.4 148 68.2
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 2.4e-53 213.4 148 67.6
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 9.1e-53 211.5 146 67.8
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 9.1e-53 211.5 178 61.8
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 1.5e-52 210.7 148 68.2
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 3.4e-52 209.5 187 59.4
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 4.2e-50 202.6 206 56.3
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 9.4e-50 201.4 123 78.9
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.6e-49 200.7 156 66.0
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.8e-48 197.2 210 51.9
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 3.9e-48 196.1 150 65.3
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 3.7e-46 189.5 144 68.1
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 2.4e-45 186.8 142 66.9
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 6.9e-45 185.3 165 58.2
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 8.5e-43 178.3 146 56.8
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 5.5e-42 175.6 142 57.7
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 5.5e-42 175.6 142 57.7
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 9.4e-42 174.9 184 54.9
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 7.4e-39 165.2 116 67.2
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 6.1e-33 145.6 141 51.1
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 6.7e-32 142.1 83 80.7
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 1.7e-30 137.5 151 46.4
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 1.1e-29 134.8 142 50.7
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 4.5e-28 129.4 208 43.3
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 2.7e-25 120.2 120 50.8
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 8.8e-24 115.2 201 38.8
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 6.3e-22 109.0 180 35.6
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 3.1e-21 106.7 87 58.6
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 8.6e-19 98.6 140 33.6
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.0e-16 89.7 115 45.2
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 4.1e-13 79.7 137 33.6
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 2.7e-12 77.0 135 30.4
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 4.3e-10 69.7 62 59.7
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 2.1e-09 67.4 44 77.3
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 6.1e-09 65.9 44 72.7
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 4.0e-08 63.2 44 68.2
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 7.5e-07 58.9 32 84.4
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 9.8e-07 58.5 49 49.0


User provided reference genes

Program Settings