Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 5.3e-82 308.1 219 100.0
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 4.5e-81 305.1 219 99.5
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 7.9e-54 214.5 225 72.0
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 7.9e-54 214.5 225 72.0
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 7.9e-54 214.5 225 72.0
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.3e-53 213.8 224 71.4
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 3.9e-53 212.2 224 73.2
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.9e-52 209.9 221 75.1
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 3.3e-52 209.1 225 68.0
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 9.7e-52 207.6 221 72.9
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.6e-51 206.8 221 72.9
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 4.8e-51 205.3 226 69.9
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 4.8e-51 205.3 222 73.4
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 8.2e-51 204.5 223 69.1
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.1e-50 204.1 221 74.7
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 2.6e-49 199.5 226 69.9
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 1.0e-48 197.6 223 73.5
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 1.3e-48 197.2 222 70.7
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.7e-48 196.8 223 73.1
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 2.2e-48 196.4 219 69.9
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 5.0e-48 195.3 227 67.8
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 8.5e-48 194.5 219 73.5
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 1.1e-47 194.1 224 67.0
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 1.9e-47 193.4 220 73.6
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 2.5e-47 193.0 220 64.5
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 2.1e-46 189.9 219 70.3
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 2.1e-46 189.9 222 70.7
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 2.7e-46 189.5 218 72.0
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 3.6e-46 189.1 223 70.0
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 3.6e-46 189.1 221 74.2
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 3.6e-46 189.1 220 68.2
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 4.6e-46 188.7 225 69.8
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 4.6e-46 188.7 221 63.8
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 4.6e-46 188.7 226 67.7
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 6.1e-46 188.3 218 61.9
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 7.9e-46 188.0 229 66.4
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 7.9e-46 188.0 219 68.9
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 1.0e-45 187.6 220 70.0
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.8e-45 186.8 219 73.1
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 1.8e-45 186.8 227 65.2
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.8e-45 186.8 222 71.6
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 2.3e-45 186.4 225 69.8
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 2.3e-45 186.4 218 66.1
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 2.3e-45 186.4 222 67.6
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 2.3e-45 186.4 220 69.5
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 3.9e-45 185.7 224 64.7
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 3.9e-45 185.7 221 68.8
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 3.9e-45 185.7 229 67.7
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 6.7e-45 184.9 215 70.2
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 2.0e-44 183.3 221 68.3
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 2.6e-44 183.0 221 72.4
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 3.3e-44 182.6 222 67.6
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 4.4e-44 182.2 221 64.3
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 5.7e-44 181.8 222 62.6
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.3e-43 180.6 219 68.0
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 4.8e-43 178.7 220 62.3
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 4.8e-43 178.7 221 73.8
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.1e-42 177.6 224 64.3
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 1.1e-42 177.6 218 62.8
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.8e-42 176.8 221 68.8
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 2.4e-42 176.4 221 70.1
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 6.9e-42 174.9 164 65.9
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 6.9e-42 174.9 218 67.9
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 2.0e-41 173.3 220 65.9
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 4.5e-41 172.2 217 71.0
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.5e-41 172.2 156 82.1
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 2.2e-40 169.9 225 69.8
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 2.9e-40 169.5 221 67.0
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 3.8e-40 169.1 222 63.1
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 1.4e-39 167.2 166 64.5
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.9e-39 166.8 150 78.7
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 2.5e-39 166.4 217 64.1
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 3.2e-39 166.0 232 63.4
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 3.2e-39 166.0 219 61.2
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 4.7e-38 162.2 219 63.9
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 1.0e-37 161.0 217 66.8
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 2.3e-37 159.8 219 64.8
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 3.0e-37 159.5 217 67.7
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 6.7e-37 158.3 223 61.9
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 2.0e-36 156.8 219 48.9
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 2.0e-36 156.8 219 62.6
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 2.6e-36 156.4 167 79.0
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 2.2e-35 153.3 160 74.4
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 8.2e-35 151.4 215 67.4
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 2.0e-33 146.7 145 59.3
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 9.4e-31 137.9 159 75.5
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 3.0e-29 132.9 128 71.1
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 6.7e-29 131.7 217 53.0
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.5e-28 130.6 126 84.1
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 2.2e-27 126.7 166 71.7
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.8e-26 123.6 229 58.5
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 5.9e-25 118.6 149 74.5
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 2.2e-24 116.7 72 84.7
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 4.0e-21 105.9 143 69.9
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 2.8e-19 99.8 177 50.8
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 6.3e-19 98.6 106 84.9
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 8.3e-19 98.2 106 76.4
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.4e-18 97.4 107 78.5
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.4e-18 97.4 107 70.1
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 2.4e-18 96.7 118 50.8
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 5.9e-17 92.0 186 55.9
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.0e-16 91.3 177 54.8
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 6.5e-16 88.6 177 55.4
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 2.5e-15 86.7 121 41.3
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 1.6e-14 84.0 60 70.0
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.1e-14 83.6 135 37.8
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.8e-14 83.2 61 68.9
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.5e-12 77.4 88 47.7
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 2.6e-12 76.6 85 42.4
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 2.9e-08 63.2 106 41.5


User provided reference genes

Program Settings