Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035791 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 7.5e-116 420.6 225 100.0
CSS0035623 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 2.0e-108 396.0 226 92.5
CSS0008431 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.2e-94 350.1 230 87.4
CSS0033199 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 8.1e-46 188.0 115 94.8
CSS0010716 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 3.8e-43 179.1 173 69.4
Dinv22062 Davidia involucrata HOM05D002859 ORTHO05D003120 2.1e-17 93.6 178 41.0
Actinidia01539 Actinidia chinensis HOM05D002859 ORTHO05D003120 6.7e-16 88.6 115 49.6
Rhsim12G0001500 Rhododendron simsii HOM05D002859 ORTHO05D003120 1.5e-15 87.4 45 91.1
Phvul.011G003500 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 1.3e-14 84.3 53 73.6
vmacro00921 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 1.3e-14 84.3 120 47.5
vmacro00954 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 1.3e-14 84.3 120 47.5
DCAR_014056 Daucus carota HOM05D002859 ORTHO05D003120 2.8e-14 83.2 47 78.7
Oeu028619.1 Olea europaea HOM05D002859 ORTHO05D003120 4.8e-14 82.4 57 71.9
Ah.05g170490 Amaranthus hybridus HOM05D002859 ORTHO05D003120 8.2e-14 81.6 127 41.7
arahy.Tifrunner.gnm1.ann1.FCJ5UL Arachis hypogaea HOM05D002859 ORTHO05D003120 8.2e-14 81.6 98 44.9
Ca_25698_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 1.1e-13 81.3 92 46.7
TPR.G25997 Trifolium pratense HOM05D002859 ORTHO05D003120 1.4e-13 80.9 64 60.9
Psat7g149800 Pisum sativum HOM05D002859 ORTHO05D003120 2.4e-13 80.1 63 63.5
GSVIVG01037132001 Vitis vinifera HOM05D002859 ORTHO05D003120 2.4e-13 80.1 48 79.2
Cc10_g16150 Coffea canephora HOM05D002859 ORTHO05D003120 3.1e-13 79.7 118 45.8
Gohir.D02G103500 Gossypium hirsutum HOM05D002859 ORTHO05D003120 4.1e-13 79.3 52 71.2
Gorai.005G117600 Gossypium raimondii HOM05D002859 ORTHO05D003120 4.1e-13 79.3 52 71.2
CiPaw.04G008400 Carya illinoinensis HOM05D002859 ORTHO05D003120 5.3e-13 79.0 152 40.1
TAR381G0145 Trochodendron aralioides HOM05D002859 ORTHO05D003120 5.3e-13 79.0 173 37.0
VMungo1127G0800 Vigna mungo HOM05D002859 ORTHO05D003120 5.3e-13 79.0 57 64.9
Lj7C415G8 Lonicera japonica HOM05D002859 ORTHO05D003120 7.0e-13 78.6 44 79.5
Medtr4g035350 Medicago truncatula HOM05D002859 ORTHO05D003120 7.0e-13 78.6 55 65.5
Lsat_1_v5_gn_4_132200 Lactuca sativa HOM05D002859 ORTHO05D003120 9.1e-13 78.2 57 66.7
arahy.Tifrunner.gnm1.ann1.J0PFQP Arachis hypogaea HOM05D002859 ORTHO05D003120 1.2e-12 77.8 101 42.6
Nitab4.5_0003598g0110 Nicotiana tabacum HOM05D002859 ORTHO05D003120 1.2e-12 77.8 59 69.5
Eucgr.F04091 Eucalyptus grandis HOM05D002859 ORTHO05D003120 1.6e-12 77.4 52 71.2
Atru.chr13.2591 Acer truncatum HOM05D002859 ORTHO05D003120 2.0e-12 77.0 50 76.0
Thecc.08G165600 Theobroma cacao HOM05D002859 ORTHO05D003120 2.6e-12 76.6 52 69.2
TWI12G1452 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 2.6e-12 76.6 66 56.1
Gohir.A02G088200 Gossypium hirsutum HOM05D002859 ORTHO05D003120 3.5e-12 76.3 53 67.9
MSTRG.25506 Avicennia marina HOM05D002859 ORTHO05D003120 4.5e-12 75.9 68 55.9
CARHR064600 Cardamine hirsuta HOM05D002859 ORTHO05D003120 5.9e-12 75.5 121 43.8
Cpa.g.sc249.14 Carica papaya HOM05D002859 ORTHO05D003120 5.9e-12 75.5 112 42.0
Aa31LG4G9230 Aethionema arabicum HOM05D002859 ORTHO05D003120 1.0e-11 74.7 121 43.0
Ciclev10022444m.g Citrus clementina HOM05D002859 ORTHO05D003120 1.0e-11 74.7 121 42.1
COL.COLO4_25054 Corchorus olitorius HOM05D002859 ORTHO05D003120 1.0e-11 74.7 121 40.5
SalBow7G1103 Salvia bowleyana HOM05D002859 ORTHO05D003120 1.0e-11 74.7 87 49.4
AL2G30910 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 1.3e-11 74.3 129 43.4
Lalb_Chr01g0000171 Lupinus albus HOM05D002859 ORTHO05D003120 1.3e-11 74.3 61 59.0
Nitab4.5_0000079g0100 Nicotiana tabacum HOM05D002859 ORTHO05D003120 1.3e-11 74.3 53 71.7
Nitab4.5_0004387g0010 Nicotiana tabacum HOM05D002859 ORTHO05D003120 1.3e-11 74.3 110 43.6
EL10Ac1g01291 Beta vulgaris HOM05D002859 ORTHO05D003120 1.7e-11 73.9 126 38.1
Thhalv10019211m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 2.9e-11 73.2 121 42.1
Migut.C01404 Erythranthe guttata HOM05D002859 ORTHO05D003120 5.0e-11 72.4 49 69.4
Solyc08g005060.3 Solanum lycopersicum HOM05D002859 ORTHO05D003120 5.0e-11 72.4 127 40.2
THA.LOC104809758 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 5.0e-11 72.4 42 81.0
Carub.0002s1818 Capsella rubella HOM05D002859 ORTHO05D003120 8.5e-11 71.6 53 71.7
Sopen08g001080 Solanum pennellii HOM05D002859 ORTHO05D003120 8.5e-11 71.6 127 40.2
AT1G71310 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 1.1e-10 71.2 121 41.3
Duzib177G0860 Durio zibethinus HOM05D002859 ORTHO05D003120 1.1e-10 71.2 52 67.3
Lj3g0004795 Lotus japonicus HOM05D002859 ORTHO05D003120 1.1e-10 71.2 125 36.8
Sc05g0005770 Simmondsia chinensis HOM05D002859 ORTHO05D003120 1.5e-10 70.9 43 74.4
RcHm_v2.0_Chr6g0249441 Rosa chinensis HOM05D002859 ORTHO05D003120 2.5e-10 70.1 127 37.8
PGSC0003DMG400001162 Solanum tuberosum HOM05D002859 ORTHO05D003120 2.5e-10 70.1 130 38.5
ECA232G0801 Erigeron canadensis HOM05D002859 ORTHO05D003120 3.2e-10 69.7 59 62.7
Sabra19G0082000 Salix brachista HOM05D002859 ORTHO05D003120 3.2e-10 69.7 93 45.2
BcaB03g15599 Brassica carinata HOM05D002859 ORTHO05D003120 5.5e-10 68.9 120 40.0
BcaC08g45785 Brassica carinata HOM05D002859 ORTHO05D003120 5.5e-10 68.9 120 40.0
CDE02G3179 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 5.5e-10 68.9 49 73.5
MBI06_g47881_MAGBIO Magnolia biondii HOM05D002859 ORTHO05D003120 5.5e-10 68.9 102 44.1
Nitab4.5_0001106g0150 Nicotiana tabacum HOM05D002859 ORTHO05D003120 5.5e-10 68.9 57 66.7
Nitab4.5_0009853g0030 Nicotiana tabacum HOM05D002859 ORTHO05D003120 5.5e-10 68.9 58 65.5
Potri.019G068500 Populus trichocarpa HOM05D002859 ORTHO05D003120 5.5e-10 68.9 132 36.4
Sp5g26480 Schrenkiella parvula HOM05D002859 ORTHO05D003120 5.5e-10 68.9 120 40.0
A07p30790 Brassica napus HOM05D002859 ORTHO05D003120 7.2e-10 68.6 120 40.0
C06p35690 Brassica napus HOM05D002859 ORTHO05D003120 7.2e-10 68.6 120 40.0
BolC6t38692H Brassica oleracea HOM05D002859 ORTHO05D003120 7.2e-10 68.6 120 40.0
BraA07t30716Z Brassica rapa HOM05D002859 ORTHO05D003120 7.2e-10 68.6 120 40.0
Haze_14010 Corylus avellana HOM05D002859 ORTHO05D003120 7.2e-10 68.6 133 37.6
HanXRQChr09g0266881 Helianthus annuus HOM05D002859 ORTHO05D003120 9.4e-10 68.2 63 57.1
AUR62013398 Chenopodium quinoa HOM05D002859 ORTHO05D003120 1.2e-09 67.8 126 38.9
ATR1089G066 Amborella trichopoda HOM05D002859 ORTHO05D003120 2.7e-09 66.6 49 65.3
Manes.05G123347 Manihot esculenta HOM05D002859 ORTHO05D003120 3.6e-09 66.2 66 54.5
Zm00001eb366350 Zea mays HOM05D002859 ORTHO05D003120 3.6e-09 66.2 61 49.2
MD05G1000800 Malus domestica HOM05D002859 ORTHO05D003120 8.0e-09 65.1 139 36.7
FvH4_2g00170 Fragaria vesca HOM05D002859 ORTHO05D003120 1.4e-08 64.3 127 37.8
FAN24G1423 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.4e-08 64.3 127 37.8
FAN25G0127 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.4e-08 64.3 187 30.5
Nn5g27200 Nelumbo nucifera HOM05D002859 ORTHO05D003120 1.4e-08 64.3 119 41.2
SGA_v2.0_scaffold118G32642 Striga asiatica HOM05D002859 ORTHO05D003120 1.4e-08 64.3 51 60.8
PSO782G5460 Papaver somniferum HOM05D002859 ORTHO05D003120 2.3e-08 63.5 122 43.4
CANSAT54G1349 Cannabis sativa HOM05D002859 ORTHO05D003120 3.0e-08 63.2 45 68.9
QL09p001171 Quercus lobata HOM05D002859 ORTHO05D003120 3.0e-08 63.2 43 62.8
FAN21G0151 Fragaria x ananassa HOM05D002859 ORTHO05D003120 5.2e-08 62.4 49 61.2
Glyma.09G234000 Glycine max HOM05D002859 ORTHO05D003120 5.2e-08 62.4 62 54.8
Prupe.8G001500 Prunus persica HOM05D002859 ORTHO05D003120 6.7e-08 62.0 192 31.8
Zm00001eb145940 Zea mays HOM05D002859 ORTHO05D003120 6.7e-08 62.0 61 44.3
Aqoxy6G00036 Aquilegia oxysepala HOM05D002859 ORTHO05D003120 1.5e-07 60.8 42 66.7
PSO063G7280 Papaver somniferum HOM05D002859 ORTHO05D003120 1.5e-07 60.8 66 51.5
HPP92_001196 Vanilla planifolia HOM05D002859 ORTHO05D003120 4.4e-07 59.3 42 64.3
FAN16G3232 Fragaria x ananassa HOM05D002859 ORTHO05D003120 5.7e-07 58.9 49 59.2
SMO358G0157 Selaginella moellendorffii HOM05D002859 ORTHO05D003120 5.7e-07 58.9 99 32.3
AagrBONN_evm.TU.Sc2ySwM_117.3205 Anthoceros agrestis HOM05D002859 ORTHO05D003120 2.8e-06 56.6 49 46.9
Mapoly0077s0052 Marchantia polymorpha HOM05D002859 ORTHO05D003120 3.7e-06 56.2 84 36.9


User provided reference genes

Program Settings