Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035788 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.3e-67 259.6 131 100.0
CSS0005611 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 4.4e-52 208.0 145 78.6
CSS0025796 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.7e-48 196.1 145 75.9
CSS0014542 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.1e-47 193.4 144 75.0
CSS0012854 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 2.8e-46 188.7 132 77.3
CSS0044643 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 4.2e-42 174.9 150 67.3
CSS0020186 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.7e-40 169.5 150 65.3
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 5.3e-37 157.9 90 94.4
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 2.3e-32 142.5 106 74.5
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 3.0e-32 142.1 106 73.6
Actinidia13982 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.5e-31 139.0 90 81.1
Actinidia14028 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.5e-31 139.0 90 81.1
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.5e-31 139.0 90 81.1
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.5e-31 139.0 90 81.1
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 3.0e-24 115.5 125 56.0
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 3.0e-24 115.5 125 56.0
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 8.7e-24 114.0 100 63.0
Nitab4.5_0002094g0090 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.3e-22 110.2 100 62.0
Nitab4.5_0000211g0060 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.8e-22 109.0 100 62.0
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 6.9e-21 104.4 106 58.5
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 1.2e-20 103.6 101 61.4
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 1.2e-20 103.6 106 56.6
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.2e-20 103.6 106 59.4
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 1.5e-20 103.2 106 55.7
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.5e-20 103.2 99 57.6
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 2.6e-20 102.4 106 55.7
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 2.6e-20 102.4 106 55.7
Lj9A653G52 Lonicera japonica HOM05D003429 ORTHO05D003873 2.6e-20 102.4 106 56.6
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 2.6e-20 102.4 106 56.6
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 2.6e-20 102.4 106 56.6
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 3.4e-20 102.1 106 50.9
Cfa010982 Carpinus fangiana HOM05D003429 ORTHO05D003873 7.6e-20 100.9 106 57.5
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 7.6e-20 100.9 106 57.5
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 7.6e-20 100.9 106 50.0
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 1.0e-19 100.5 106 56.6
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.0e-19 100.5 106 53.8
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 1.3e-19 100.1 105 54.3
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.3e-19 100.1 105 55.2
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 1.3e-19 100.1 106 57.5
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 1.3e-19 100.1 90 58.9
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 1.3e-19 100.1 105 55.2
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 2.2e-19 99.4 106 56.6
Ca_14865_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 2.2e-19 99.4 106 50.0
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 2.2e-19 99.4 105 53.3
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 2.2e-19 99.4 106 57.5
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 2.2e-19 99.4 105 52.4
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 2.2e-19 99.4 101 57.4
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 2.9e-19 99.0 100 55.0
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 2.9e-19 99.0 106 57.5
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 2.9e-19 99.0 106 54.7
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 4.9e-19 98.2 106 56.6
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 4.9e-19 98.2 105 54.3
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 6.5e-19 97.8 105 51.4
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 6.5e-19 97.8 105 51.4
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 6.5e-19 97.8 105 51.4
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 6.5e-19 97.8 106 53.8
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 6.5e-19 97.8 105 51.4
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 8.4e-19 97.4 106 54.7
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 1.1e-18 97.1 106 55.7
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 1.1e-18 97.1 106 55.7
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 1.1e-18 97.1 105 51.4
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 1.1e-18 97.1 101 55.4
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 1.4e-18 96.7 106 54.7
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 1.4e-18 96.7 106 55.7
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 1.9e-18 96.3 105 52.4
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 1.9e-18 96.3 105 51.4
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 1.9e-18 96.3 105 51.4
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 1.9e-18 96.3 106 54.7
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 2.5e-18 95.9 106 54.7
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 2.5e-18 95.9 106 54.7
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 2.5e-18 95.9 105 51.4
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 2.5e-18 95.9 105 52.4
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 3.2e-18 95.5 106 55.7
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 3.2e-18 95.5 106 50.9
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 4.2e-18 95.1 105 52.4
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 4.2e-18 95.1 106 52.8
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 4.2e-18 95.1 106 52.8
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 4.2e-18 95.1 101 58.4
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 4.2e-18 95.1 106 51.9
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 5.5e-18 94.7 98 54.1
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 5.5e-18 94.7 106 50.0
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 5.5e-18 94.7 106 53.8
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 7.1e-18 94.4 106 55.7
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 7.1e-18 94.4 105 51.4
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 9.3e-18 94.0 105 50.5
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 9.3e-18 94.0 98 53.1
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 1.2e-17 93.6 105 50.5
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.2e-17 93.6 105 50.5
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.2e-17 93.6 105 50.5
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.2e-17 93.6 105 50.5
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.2e-17 93.6 105 50.5
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.2e-17 93.6 105 50.5
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 1.2e-17 93.6 106 53.8
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 1.2e-17 93.6 106 51.9
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 1.2e-17 93.6 90 56.7
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.2e-17 93.6 106 51.9
VMungo0720G0379 Vigna mungo HOM05D003429 ORTHO05D003873 1.2e-17 93.6 107 52.3
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 1.6e-17 93.2 106 53.8
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 1.6e-17 93.2 101 53.5
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 2.1e-17 92.8 98 56.1
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 2.1e-17 92.8 105 51.4
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 2.7e-17 92.4 98 53.1
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 2.7e-17 92.4 98 53.1
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 2.7e-17 92.4 98 53.1
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 2.7e-17 92.4 98 55.1
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 4.6e-17 91.7 106 49.1
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 6.0e-17 91.3 98 55.1
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 6.0e-17 91.3 101 55.4
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 7.9e-17 90.9 98 52.0
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 1.3e-16 90.1 106 47.2
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 1.3e-16 90.1 90 53.3
Haze_02954 Corylus avellana HOM05D003429 ORTHO05D003873 1.8e-16 89.7 132 49.2
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 1.8e-16 89.7 98 53.1
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.3e-16 89.4 106 51.9
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 3.9e-16 88.6 107 45.8
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 6.7e-16 87.8 98 54.1
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 6.7e-16 87.8 98 54.1
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 8.7e-16 87.4 98 53.1
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 8.7e-16 87.4 98 53.1
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 8.7e-16 87.4 98 53.1
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 8.7e-16 87.4 90 53.3
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.1e-15 87.0 102 52.0
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.9e-15 86.3 106 48.1
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 2.5e-15 85.9 62 71.0
SHI11319 Sapria himalayana HOM05D003429 ORTHO05D003873 3.3e-15 85.5 61 73.8
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 5.7e-15 84.7 106 46.2
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 5.7e-15 84.7 106 46.2
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 2.1e-14 82.8 81 59.3
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 6.3e-14 81.3 90 47.8
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 6.3e-14 81.3 106 45.3
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 2.6e-12 75.9 93 44.1
AUR62018433 Chenopodium quinoa HOM05D003429 ORTHO05D003873 3.4e-12 75.5 123 38.2
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 1.3e-11 73.6 90 43.3
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 8.4e-11 70.9 90 42.2
AUR62021000 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.9e-10 69.7 99 40.4
Rhsim09G0101900 Rhododendron simsii HOM05D003429 ORTHO05D003873 7.2e-10 67.8 70 60.0
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 3.5e-09 65.5 93 38.7
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 6.1e-09 64.7 88 37.5
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 6.7e-08 61.2 101 34.7
Psat6g086560 Pisum sativum HOM05D003429 ORTHO05D003873 4.3e-07 58.5 75 45.3


User provided reference genes

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