Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 9.5e-34 146.4 79 100.0
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 6.8e-32 140.2 79 96.2
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 6.9e-24 113.6 79 84.8
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 6.9e-24 113.6 79 84.8
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 6.9e-24 113.6 79 84.8
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 9.0e-24 113.2 79 84.8
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.5e-20 101.3 80 73.8
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 4.6e-20 100.9 82 67.1
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.9e-19 97.8 79 69.6
CSS0041171 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 8.7e-19 96.7 67 88.1
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 3.3e-18 94.7 79 70.9
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 5.6e-18 94.0 79 70.9
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.6e-17 92.4 67 85.1
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 4.8e-17 90.9 79 68.4
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 4.0e-16 87.8 79 68.4
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.2e-15 86.3 79 67.1
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 1.5e-15 85.9 81 71.6
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 3.4e-15 84.7 79 64.6
CSS0041767 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.5e-15 84.3 67 80.6
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.3e-14 82.8 80 65.0
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 1.3e-14 82.8 79 67.1
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.3e-14 82.8 81 70.4
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 1.7e-14 82.4 79 65.8
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.8e-14 81.3 79 63.3
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.4e-14 80.5 80 68.8
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.1e-13 79.7 80 68.8
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.1e-13 79.7 78 64.1
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.1e-13 79.7 82 67.1
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 1.1e-13 79.7 79 68.4
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.4e-13 79.3 81 66.7
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.9e-13 79.0 81 66.7
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.9e-13 79.0 80 56.2
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.9e-13 79.0 80 65.0
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 1.9e-13 79.0 81 65.4
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.4e-13 78.6 78 60.3
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.4e-13 78.6 81 61.7
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 4.2e-13 77.8 80 67.5
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 5.4e-13 77.4 78 65.4
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 7.1e-13 77.0 78 65.4
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 7.1e-13 77.0 80 65.0
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 9.3e-13 76.6 80 65.0
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.6e-12 75.9 81 61.7
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.6e-12 75.9 78 59.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 1.6e-12 75.9 81 61.7
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 1.6e-12 75.9 79 64.6
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.6e-12 75.9 80 67.5
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 2.1e-12 75.5 78 64.1
CAN.G405.1 Capsicum annuum HOM05D002160 ORTHO05D002012 2.7e-12 75.1 79 68.4
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.5e-12 74.7 80 63.8
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.5e-12 74.7 80 63.8
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.6e-12 74.3 80 61.2
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.6e-12 74.3 81 50.6
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 6.0e-12 73.9 81 60.5
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.0e-12 73.9 79 65.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 6.0e-12 73.9 80 63.8
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 6.0e-12 73.9 80 63.8
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 6.0e-12 73.9 81 65.4
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 7.9e-12 73.6 78 62.8
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 7.9e-12 73.6 80 62.5
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 7.9e-12 73.6 102 53.9
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 7.9e-12 73.6 80 65.0
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.0e-11 73.2 81 61.7
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.0e-11 73.2 80 63.8
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.0e-11 73.2 80 61.2
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.3e-11 72.8 81 61.7
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 1.3e-11 72.8 81 60.5
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 1.3e-11 72.8 121 47.1
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.3e-11 72.8 81 59.3
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 1.8e-11 72.4 81 60.5
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 1.8e-11 72.4 81 59.3
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 1.8e-11 72.4 80 61.2
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 2.3e-11 72.0 81 60.5
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 2.3e-11 72.0 81 60.5
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.0e-11 71.6 80 52.5
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 3.0e-11 71.6 81 49.4
Lsat_1_v5_gn_8_73001 Lactuca sativa HOM05D002160 ORTHO05D002012 3.0e-11 71.6 57 63.2
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 3.0e-11 71.6 81 59.3
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.0e-11 71.6 81 58.0
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.9e-11 71.2 81 59.3
AUR62019082 Chenopodium quinoa HOM05D002160 ORTHO05D002012 3.9e-11 71.2 79 59.5
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 3.9e-11 71.2 78 62.8
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 3.9e-11 71.2 81 63.0
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 3.9e-11 71.2 80 61.2
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 5.1e-11 70.9 81 60.5
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 5.1e-11 70.9 81 60.5
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 5.1e-11 70.9 81 58.0
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 6.7e-11 70.5 83 60.2
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 8.7e-11 70.1 81 48.1
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 8.7e-11 70.1 81 48.1
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 8.7e-11 70.1 81 48.1
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 8.7e-11 70.1 81 48.1
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 8.7e-11 70.1 81 48.1
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 8.7e-11 70.1 80 57.5
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 8.7e-11 70.1 80 61.2
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.7e-11 70.1 84 58.3
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 1.1e-10 69.7 82 45.1
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 1.5e-10 69.3 81 48.1
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 1.5e-10 69.3 81 48.1
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 1.5e-10 69.3 81 48.1
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 1.5e-10 69.3 81 48.1
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 1.5e-10 69.3 80 65.0
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 1.5e-10 69.3 79 64.6
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 1.5e-10 69.3 81 56.8
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 1.9e-10 68.9 79 60.8
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 2.5e-10 68.6 78 59.0
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 2.5e-10 68.6 79 62.0
Solyc06g005465.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.5e-10 68.6 82 62.2
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 3.3e-10 68.2 81 58.0
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 3.3e-10 68.2 79 57.0
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 4.3e-10 67.8 80 60.0
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 4.3e-10 67.8 80 60.0
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.3e-10 67.8 81 58.0
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 9.6e-10 66.6 56 57.1
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 9.6e-10 66.6 82 58.5
Nitab4.5_0022803g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 9.6e-10 66.6 79 67.1
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.3e-09 66.2 78 57.7
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 1.3e-09 66.2 81 46.9
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 1.3e-09 66.2 82 47.6
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 1.6e-09 65.9 79 59.5
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.6e-09 65.9 74 51.4
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.1e-09 65.5 79 64.6
Sopen06g001440 Solanum pennellii HOM05D002160 ORTHO05D002012 2.1e-09 65.5 80 63.8
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 3.7e-09 64.7 82 52.4
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 3.7e-09 64.7 81 55.6
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 3.7e-09 64.7 81 55.6
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 4.8e-09 64.3 83 59.0
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 6.2e-09 63.9 81 59.3
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 6.2e-09 63.9 81 59.3
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 6.2e-09 63.9 81 54.3
HanXRQChr08g0235781 Helianthus annuus HOM05D002160 ORTHO05D002012 6.2e-09 63.9 69 65.2
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 6.2e-09 63.9 81 55.6
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 8.1e-09 63.5 82 51.2
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.1e-09 63.5 78 59.0
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 8.1e-09 63.5 80 56.2
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 1.1e-08 63.2 80 65.0
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 1.1e-08 63.2 79 58.2
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 1.1e-08 63.2 80 60.0
Oeu051437.1 Olea europaea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 67 55.2
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.4e-08 62.8 79 60.8
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 1.8e-08 62.4 80 56.2
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.8e-08 62.4 80 56.2
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.8e-08 62.4 81 54.3
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 2.4e-08 62.0 81 59.3
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 2.4e-08 62.0 81 59.3
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 2.4e-08 62.0 81 55.6
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.4e-08 62.0 50 66.0
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.4e-08 62.0 50 66.0
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.4e-08 62.0 50 66.0
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.4e-08 62.0 82 47.6
unitig_21.g21031 Utricularia gibba HOM05D002160 ORTHO05D002012 2.4e-08 62.0 80 51.2
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 2.4e-08 62.0 80 58.8
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 3.1e-08 61.6 79 58.2
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 4.0e-08 61.2 79 55.7
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 5.3e-08 60.8 83 44.6
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 6.9e-08 60.5 81 53.1
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 6.9e-08 60.5 50 64.0
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 6.9e-08 60.5 81 51.9
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 6.9e-08 60.5 80 62.5
CSS0049920 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 9.0e-08 60.1 79 64.6
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 1.2e-07 59.7 81 44.4
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.2e-07 59.7 82 46.3
Sed0021463 Sechium edule HOM05D002160 ORTHO05D002012 1.2e-07 59.7 83 54.2
Sopen04g025910 Solanum pennellii HOM05D002160 ORTHO05D002012 1.2e-07 59.7 79 59.5
CSS0041307 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 1.5e-07 59.3 79 63.3
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 1.5e-07 59.3 79 55.7
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 2.0e-07 58.9 81 43.2
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 2.0e-07 58.9 75 45.3
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 2.6e-07 58.5 81 53.1
Rhsim13G0082700 Rhododendron simsii HOM05D002160 ORTHO05D002012 3.4e-07 58.2 67 65.7
Oeu053915.1 Olea europaea HOM05D022828 ORTHO05D002012 4.5e-07 57.8 72 59.7
Solyc04g058100.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 4.5e-07 57.8 79 57.0
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 5.8e-07 57.4 81 43.2
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 7.6e-07 57.0 82 42.7
Manes.07G090700 Manihot esculenta HOM05D002160 ORTHO05D002012 9.9e-07 56.6 45 80.0
CSS0046936 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 1.3e-06 56.2 79 63.3
Solyc04g058150.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.3e-06 56.2 79 58.2
Sopen04g026050 Solanum pennellii HOM05D002160 ORTHO05D002012 1.3e-06 56.2 79 58.2
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 1.3e-06 56.2 56 53.6
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 2.2e-06 55.5 80 57.5
SalBow3G1981 Salvia bowleyana HOM05D002160 ORTHO05D002012 2.2e-06 55.5 76 52.6
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 3.8e-06 54.7 74 56.8
Eucgr.K03136 Eucalyptus grandis HOM05D002160 ORTHO05D002012 3.8e-06 54.7 80 53.8
Nitab4.5_0003635g0040 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.8e-06 54.7 69 50.7
Os05g0111300 Oryza sativa ssp. japonica HOM05D024798 ORTHO05D002012 4.9e-06 54.3 76 56.6


User provided reference genes

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