Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.1e-146 520.8 261 100.0
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.3e-107 391.0 245 82.9
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.0e-105 385.2 241 83.0
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.9e-103 378.3 241 80.9
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.0e-89 330.9 260 69.6
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 2.2e-79 299.7 258 63.6
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 9.4e-78 294.3 258 62.8
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.2e-77 293.9 247 65.6
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 1.4e-76 290.4 258 60.9
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.1e-75 287.3 259 61.0
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 2.0e-72 276.6 258 58.5
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 1.0e-71 274.2 241 58.5
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 4.2e-70 268.9 257 57.6
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 2.1e-69 266.5 258 56.2
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 1.8e-68 263.5 241 57.3
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 2.3e-68 263.1 258 56.6
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 3.0e-68 262.7 255 57.6
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 3.9e-68 262.3 258 54.7
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 6.7e-68 261.5 258 55.0
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 8.8e-68 261.2 258 55.8
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 2.0e-67 260.0 258 54.3
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 2.0e-67 260.0 255 55.7
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 2.0e-67 260.0 258 54.7
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 3.3e-67 259.2 258 56.6
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 4.4e-67 258.8 260 54.6
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 9.7e-67 257.7 257 55.6
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 1.3e-66 257.3 255 55.3
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.7e-66 256.9 259 54.8
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 2.2e-66 256.5 257 56.0
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 3.7e-66 255.8 258 57.0
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 4.8e-66 255.4 258 55.0
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 4.8e-66 255.4 255 55.7
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 6.3e-66 255.0 258 55.0
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.8e-65 253.4 258 54.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 1.8e-65 253.4 256 54.3
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 2.4e-65 253.1 238 55.5
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 4.1e-65 252.3 259 54.8
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 5.3e-65 251.9 258 55.4
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 5.3e-65 251.9 258 54.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 5.3e-65 251.9 258 55.4
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 5.3e-65 251.9 250 56.4
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 7.0e-65 251.5 258 52.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 7.0e-65 251.5 257 55.3
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 7.0e-65 251.5 255 54.5
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 9.1e-65 251.1 252 55.6
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 9.1e-65 251.1 255 55.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.0e-64 250.0 238 55.0
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.6e-64 249.6 258 52.3
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 5.9e-64 248.4 234 56.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 5.9e-64 248.4 253 54.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 5.9e-64 248.4 238 55.0
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 7.7e-64 248.1 258 54.7
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 7.7e-64 248.1 253 55.3
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.0e-63 247.7 234 55.6
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 1.0e-63 247.7 236 55.1
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.3e-63 247.3 234 55.6
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 1.3e-63 247.3 241 54.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 1.3e-63 247.3 258 53.9
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 1.7e-63 246.9 258 54.7
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 1.7e-63 246.9 258 54.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 1.7e-63 246.9 258 53.9
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 2.2e-63 246.5 251 56.2
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.2e-63 246.5 258 54.3
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.2e-63 246.5 258 54.3
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 5.0e-63 245.4 234 55.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 6.5e-63 245.0 251 55.0
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 6.5e-63 245.0 251 55.0
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 8.5e-63 244.6 258 51.6
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 1.1e-62 244.2 258 53.9
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 1.5e-62 243.8 251 56.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 1.5e-62 243.8 258 52.3
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 1.9e-62 243.4 238 53.8
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 5.5e-62 241.9 234 54.7
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 5.5e-62 241.9 258 53.5
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 7.2e-62 241.5 255 52.2
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 9.4e-62 241.1 241 52.7
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 1.2e-61 240.7 235 55.3
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 1.6e-61 240.4 255 51.8
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 2.1e-61 240.0 253 54.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 4.7e-61 238.8 255 53.7
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 4.7e-61 238.8 258 50.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 6.1e-61 238.4 253 53.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 1.8e-60 236.9 260 52.3
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 4.0e-60 235.7 237 53.6
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 4.0e-60 235.7 238 53.4
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 2.6e-59 233.0 252 54.0
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 3.3e-59 232.6 252 53.6
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 3.3e-59 232.6 252 53.6
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 4.4e-59 232.3 254 50.0
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 5.7e-59 231.9 253 53.0
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 9.7e-59 231.1 253 53.0
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.7e-58 230.3 259 51.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 2.2e-58 229.9 253 52.6
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 2.2e-58 229.9 253 52.6
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.2e-58 229.9 253 52.6
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 3.7e-58 229.2 240 53.8
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 4.8e-58 228.8 243 50.6
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 8.2e-58 228.0 251 51.8
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 4.1e-57 225.7 240 52.9
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 5.3e-57 225.3 258 50.8
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 9.1e-57 224.6 244 53.7
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.2e-56 224.2 253 49.8
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 2.7e-56 223.0 238 52.1
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 3.5e-56 222.6 236 49.6
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 4.5e-56 222.2 253 51.0
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 1.3e-55 220.7 244 52.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 1.3e-55 220.7 244 52.9
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.7e-55 220.3 260 50.0
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 1.7e-55 220.3 253 51.4
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 5.5e-54 215.3 246 51.6
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 5.5e-54 215.3 246 51.6
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.1e-53 213.4 258 47.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 2.1e-53 213.4 258 47.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 8.0e-53 211.5 236 49.2
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 1.0e-52 211.1 253 46.2
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 7.2e-46 188.3 235 44.3
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.9e-42 175.6 238 45.0
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 5.4e-41 172.2 243 38.7
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 8.6e-39 164.9 238 42.9
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.7e-37 159.1 253 38.3
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.4e-35 152.9 237 38.8
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.3e-34 151.0 234 38.0
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.2e-25 119.8 229 35.4
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.9e-22 110.5 239 30.5
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 3.0e-15 86.7 55 76.4
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-14 84.7 80 60.0
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-14 84.7 80 60.0
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 7.1e-09 65.5 77 45.5
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-07 59.7 54 66.7
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-07 59.7 54 66.7
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-07 59.7 54 66.7
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-07 59.7 54 66.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-06 58.2 54 64.8
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.5e-06 57.0 54 64.8


User provided reference genes

Program Settings