Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 6.3e-60 233.8 110 100.0
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.1e-18 95.9 51 88.2
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 8.7e-09 63.9 36 83.3
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 8.7e-09 63.9 48 68.8
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.5e-08 63.2 33 87.9
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.9e-08 62.8 33 87.9
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 2.5e-08 62.4 48 68.8
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 3.3e-08 62.0 33 84.8
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 3.3e-08 62.0 33 84.8
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 3.3e-08 62.0 33 84.8
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 5.6e-08 61.2 33 84.8
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 7.3e-08 60.8 48 68.8
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 7.3e-08 60.8 48 68.8
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 7.3e-08 60.8 33 84.8
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 9.6e-08 60.5 48 66.7
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 9.6e-08 60.5 48 66.7
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.3e-07 60.1 48 66.7
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.3e-07 60.1 48 66.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.6e-07 59.7 33 81.8
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 1.6e-07 59.7 33 81.8
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.1e-07 59.3 33 81.8
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.1e-07 59.3 33 81.8
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.1e-07 59.3 36 75.0
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 2.8e-07 58.9 33 81.8
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 2.8e-07 58.9 33 81.8
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 2.8e-07 58.9 33 81.8
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 3.6e-07 58.5 48 66.7
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 4.8e-07 58.2 50 60.0
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 4.8e-07 58.2 50 60.0
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 1.1e-06 57.0 35 77.1
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.1e-06 57.0 33 81.8
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.1e-06 57.0 33 81.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.1e-06 57.0 33 81.8
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.8e-06 56.2 50 60.0
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.8e-06 56.2 33 78.8
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.4e-06 55.8 33 75.8
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 6.9e-06 54.3 33 72.7


User provided reference genes

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