Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035692 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.3e-115 419.1 235 100.0
CSS0007174 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 7.6e-111 404.1 244 90.6
CSS0002956 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.1e-97 359.4 246 85.0
CSS0009045 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.3e-89 333.6 244 82.8
CSS0021062 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D033864 1.8e-88 329.7 252 76.2
CSS0048058 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 4.9e-86 321.6 249 77.1
CSS0029515 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 4.2e-85 318.5 252 75.8
CSS0045357 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 4.2e-85 318.5 252 75.8
CSS0018040 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.5e-82 309.3 254 75.6
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.5e-23 112.8 62 93.5
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 1.8e-19 100.5 92 66.3
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 5.2e-19 99.0 102 56.9
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 6.8e-19 98.6 91 65.9
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 5.7e-18 95.5 90 65.6
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 2.2e-17 93.6 89 65.2
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.7e-17 92.8 84 66.7
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 3.7e-17 92.8 86 69.8
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 6.4e-17 92.0 85 69.4
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 8.3e-17 91.7 78 69.2
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.8e-16 90.5 85 65.9
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.4e-16 90.1 85 67.1
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.4e-16 90.1 79 69.6
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 9.2e-16 88.2 65 80.0
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 9.2e-16 88.2 85 65.9
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 1.2e-15 87.8 86 67.4
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 1.6e-15 87.4 86 64.0
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 2.0e-15 87.0 65 80.0
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 2.0e-15 87.0 86 66.3
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 2.7e-15 86.7 79 63.3
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 3.5e-15 86.3 84 63.1
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 3.5e-15 86.3 84 63.1
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 3.5e-15 86.3 84 63.1
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 4.6e-15 85.9 88 63.6
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 4.6e-15 85.9 84 63.1
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 5.9e-15 85.5 100 52.0
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 5.9e-15 85.5 85 63.5
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 7.8e-15 85.1 66 77.3
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 7.8e-15 85.1 87 64.4
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 7.8e-15 85.1 85 65.9
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 1.3e-14 84.3 88 60.2
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.3e-14 84.3 84 61.9
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-14 84.0 66 75.8
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 1.7e-14 84.0 87 63.2
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 1.7e-14 84.0 96 59.4
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 2.3e-14 83.6 65 76.9
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 2.3e-14 83.6 93 51.6
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 2.3e-14 83.6 87 63.2
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.3e-14 83.6 65 73.8
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 3.0e-14 83.2 86 55.8
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.0e-14 83.2 66 75.8
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 3.0e-14 83.2 85 56.5
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 3.0e-14 83.2 85 63.5
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 3.0e-14 83.2 82 64.6
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 3.9e-14 82.8 85 57.6
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 3.9e-14 82.8 84 61.9
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 5.0e-14 82.4 84 58.3
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 5.0e-14 82.4 85 68.2
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.6e-14 81.6 86 61.6
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 8.6e-14 81.6 85 61.2
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 1.1e-13 81.3 84 60.7
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.1e-13 81.3 84 60.7
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 1.1e-13 81.3 62 77.4
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 1.5e-13 80.9 90 60.0
Hma1.2p1_0210F.1_g089550 Hydrangea macrophylla HOM05D003827 ORTHO05D004518 1.5e-13 80.9 57 78.9
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 1.9e-13 80.5 85 55.3
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 2.5e-13 80.1 85 58.8
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.5e-13 80.1 74 64.9
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.5e-13 80.1 79 62.0
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 2.5e-13 80.1 65 72.3
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.3e-13 79.7 88 61.4
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 3.3e-13 79.7 63 77.8
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 4.3e-13 79.3 80 61.2
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.6e-13 79.0 183 38.3
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.6e-13 79.0 65 76.9
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 5.6e-13 79.0 54 77.8
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 5.6e-13 79.0 72 68.1
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 5.6e-13 79.0 77 57.1
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 7.3e-13 78.6 56 82.1
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.3e-13 78.6 66 74.2
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.3e-13 78.6 66 74.2
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 7.3e-13 78.6 86 53.5
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 7.3e-13 78.6 84 59.5
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 7.3e-13 78.6 84 59.5
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 9.5e-13 78.2 86 61.6
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 9.5e-13 78.2 86 61.6
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 9.5e-13 78.2 55 69.1
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 9.5e-13 78.2 86 59.3
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 9.5e-13 78.2 92 57.6
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 9.5e-13 78.2 77 64.9
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 9.5e-13 78.2 54 72.2
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 1.2e-12 77.8 82 61.0
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 1.2e-12 77.8 86 60.5
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 1.6e-12 77.4 85 52.9
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.6e-12 77.4 92 58.7
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.6e-12 77.4 94 54.3
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 2.1e-12 77.0 70 65.7
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 2.1e-12 77.0 86 58.1
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 2.8e-12 76.6 92 57.6
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.8e-12 76.6 86 61.6
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 4.7e-12 75.9 85 54.1
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 4.7e-12 75.9 99 52.5
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 6.2e-12 75.5 59 71.2
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 6.2e-12 75.5 89 55.1
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 6.2e-12 75.5 85 52.9
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 8.0e-12 75.1 87 50.6
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.0e-11 74.7 56 73.2
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.4e-11 74.3 86 47.7
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 1.8e-11 73.9 54 75.9
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 1.8e-11 73.9 74 56.8
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 2.3e-11 73.6 82 53.7
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 2.3e-11 73.6 92 55.4
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 2.3e-11 73.6 83 59.0
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 3.1e-11 73.2 69 66.7
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 3.1e-11 73.2 69 66.7
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 6.8e-11 72.0 89 55.1
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 1.2e-10 71.2 54 77.8
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 1.5e-10 70.9 62 66.1
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.6e-10 70.1 94 51.1
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 3.4e-10 69.7 54 66.7
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 4.4e-10 69.3 83 53.0
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 4.4e-10 69.3 73 63.0
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 7.5e-10 68.6 112 45.5
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 1.3e-09 67.8 57 64.9
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 3.7e-09 66.2 57 64.9
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 3.7e-09 66.2 93 52.7
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 3.7e-09 66.2 85 52.9
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 4.9e-09 65.9 56 66.1
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 4.9e-09 65.9 68 58.8
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 6.4e-09 65.5 66 60.6
Lj2A449T51 Lonicera japonica HOM05D000401 ORTHO05D000252 6.4e-09 65.5 204 36.3
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 1.1e-08 64.7 82 50.0
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 1.1e-08 64.7 57 63.2
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 2.4e-08 63.5 56 62.5
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 2.4e-08 63.5 103 48.5
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 7.0e-08 62.0 57 61.4
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 7.0e-08 62.0 87 50.6
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 1.2e-07 61.2 59 59.3
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 1.6e-07 60.8 59 59.3
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 1.6e-07 60.8 59 59.3
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 6.0e-07 58.9 94 46.8
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 6.0e-07 58.9 64 59.4
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 7.8e-07 58.5 64 56.2
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 1.3e-06 57.8 61 55.7
Gohir.A05G392150 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-06 57.4 47 72.3
Gohir.D04G024950 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-06 57.4 47 74.5
Gorai.012G027500 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.7e-06 57.4 47 74.5
TAR628G1031 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.7e-06 57.4 209 34.9
TAR628G1738 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.7e-06 57.4 209 34.9
Cpa.g.c30864 Carica papaya HOM05D000401 ORTHO05D000252 3.9e-06 56.2 212 38.7
Dinv39966 Davidia involucrata HOM05D038181 ORTHO05D000252 3.9e-06 56.2 114 41.2
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 5.0e-06 55.8 55 63.6


User provided reference genes

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