Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035648 Camellia sinensis var. sinensis HOM05D048223 ORTHO05D111871 4.4e-49 197.6 96 100.0
CSS0034670 Camellia sinensis var. sinensis HOM05D048223 ORTHO05D110020 7.5e-49 196.8 96 99.0
Actinidia17730 Actinidia chinensis HOM05D000001 ORTHO05D000003 9.5e-20 100.1 98 54.1
GSVIVG01031345001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.1e-18 96.7 103 50.5
Potri.016G029500 Populus trichocarpa HOM05D000001 ORTHO05D000003 6.0e-14 80.9 92 47.8
TAR636G3274 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.0e-14 80.9 79 50.6
Eucgr.B01355 Eucalyptus grandis HOM05D000001 ORTHO05D000003 3.0e-13 78.6 89 46.1
MSTRG.20350 Avicennia marina HOM05D000001 ORTHO05D000003 6.6e-13 77.4 102 42.2
Cpa.g.sc898.3 Carica papaya HOM05D000001 ORTHO05D000003 6.6e-13 77.4 88 46.6
Nn5g27757 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.6e-13 77.4 95 44.2
Sabra16G0033400 Salix brachista HOM05D000001 ORTHO05D000003 6.6e-13 77.4 92 45.7
Ciclev10030069m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.1e-12 76.6 102 41.2
Aqoxy2G02410 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.5e-12 76.3 84 46.4
MBI05_g35189_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.3e-12 74.7 101 43.6
CiPaw.03G192100 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.6e-11 71.6 80 45.0
TWI81G0676 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.7e-11 71.2 95 42.1
Haze_27026 Corylus avellana HOM05D000001 ORTHO05D000003 1.4e-10 69.7 97 41.2
CANSAT54G3007 Cannabis sativa HOM05D000001 ORTHO05D000003 1.8e-10 69.3 97 38.1
Cfa023071 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.8e-10 69.3 97 40.2
Prupe.6G302800 Prunus persica HOM05D000001 ORTHO05D000003 2.4e-10 68.9 92 40.2
THA.LOC104820421 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.4e-10 68.9 91 44.0
FvH4_6g08690 Fragaria vesca HOM05D000001 ORTHO05D000003 8.9e-10 67.0 91 38.5
FAN14G3558 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.9e-10 67.0 91 38.5
QL08p044864 Quercus lobata HOM05D000001 ORTHO05D000003 8.9e-10 67.0 95 41.1
CsaV3_2G009550 Cucumis sativus L. HOM05D000001 ORTHO05D000003 1.2e-09 66.6 92 38.0
ClCG01G004060 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.5e-09 66.2 92 38.0
MD04G1184300 Malus domestica HOM05D000001 ORTHO05D000003 1.5e-09 66.2 102 33.3
MD12G1197500 Malus domestica HOM05D000001 ORTHO05D000003 1.5e-09 66.2 92 38.0
Atru.chr12.1513 Acer truncatum HOM05D000001 ORTHO05D000003 2.0e-09 65.9 91 39.6
FAN09G2164 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-09 65.5 100 36.0
RcHm_v2.0_Chr3g0458831 Rosa chinensis HOM05D000001 ORTHO05D000003 3.4e-09 65.1 91 37.4
MELO3C008756.2 Cucumis melo HOM05D000001 ORTHO05D000003 4.4e-09 64.7 92 37.0
Sed0017156 Sechium edule HOM05D000001 ORTHO05D000003 5.8e-09 64.3 85 41.2
FAN02G4515 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.6e-09 63.9 91 37.4
Prupe.6G026400 Prunus persica HOM05D000001 ORTHO05D000003 1.9e-07 59.3 83 36.1
Aa31LG10G11370 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.2e-07 58.2 88 35.2
CsaV3_7G023920 Cucumis sativus L. HOM05D000001 ORTHO05D000003 4.2e-07 58.2 93 35.5
Dinv44704 Davidia involucrata HOM05D000001 ORTHO05D000003 4.2e-07 58.2 83 33.7
Thecc.08G167800 Theobroma cacao HOM05D000001 ORTHO05D000003 4.2e-07 58.2 82 34.1
GSVIVG01033872001 Vitis vinifera HOM05D000001 ORTHO05D000003 4.2e-07 58.2 79 38.0
MD11G1035200 Malus domestica HOM05D000001 ORTHO05D000003 5.4e-07 57.8 83 34.9
Solyc03g097850.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.4e-07 57.8 93 34.4
CiPaw.12G139800 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.1e-07 57.4 85 32.9
RcHm_v2.0_Chr5g0076611 Rosa chinensis HOM05D000001 ORTHO05D000003 7.1e-07 57.4 83 36.1
Sed0005887 Sechium edule HOM05D000001 ORTHO05D000003 7.1e-07 57.4 83 34.9
HPP92_004521 Vanilla planifolia HOM05D000001 ORTHO05D000003 7.1e-07 57.4 97 33.0
PGSC0003DMG400019858 Solanum tuberosum HOM05D000001 ORTHO05D000003 1.2e-06 56.6 82 35.4
ClCG09G021480 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.6e-06 56.2 93 34.4
ClCG10G018800 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.6e-06 56.2 94 34.0
MELO3C024960.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.6e-06 56.2 93 35.5
FvH4_3g42650 Fragaria vesca HOM05D000001 ORTHO05D000003 1.6e-06 56.2 83 36.1
MBI10_g04864_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.6e-06 56.2 97 34.0
Zm00001eb326090 Zea mays HOM05D000001 ORTHO05D009054 1.6e-06 56.2 83 36.1
Zm00001eb431340 Zea mays HOM05D000001 ORTHO05D000003 1.6e-06 56.2 96 37.5
Aqoxy1G00227 Aquilegia oxysepala HOM05D000001 ORTHO05D009054 2.1e-06 55.8 83 33.7
MELO3C019467.2 Cucumis melo HOM05D000001 ORTHO05D000003 2.1e-06 55.8 94 31.9
Migut.C00607 Erythranthe guttata HOM05D000001 ORTHO05D000003 2.1e-06 55.8 82 32.9
HPP92_017036 Vanilla planifolia HOM05D000112 ORTHO05D001918 2.1e-06 55.8 90 31.1
Peaxi162Scf00139g00112 Petunia axillaris HOM05D000001 ORTHO05D000003 2.7e-06 55.5 83 33.7
Nitab4.5_0004583g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.5e-06 55.1 83 33.7
QL08p003394 Quercus lobata HOM05D000001 ORTHO05D000003 3.5e-06 55.1 83 31.3
Sabra02G0021900 Salix brachista HOM05D000001 ORTHO05D009054 3.5e-06 55.1 79 32.9
ClCG05G009630 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.6e-06 54.7 94 31.9
RcHm_v2.0_Chr5g0076281 Rosa chinensis HOM05D000001 ORTHO05D000003 4.6e-06 54.7 83 34.9
Sabra16G0242700 Salix brachista HOM05D000001 ORTHO05D000003 4.6e-06 54.7 83 33.7
Sed0003288 Sechium edule HOM05D000001 ORTHO05D000003 4.6e-06 54.7 82 32.9
Ciclev10013825m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.0e-06 54.3 79 35.4
MELO3C009487.2 Cucumis melo HOM05D000001 ORTHO05D000003 6.0e-06 54.3 93 31.2
CsaV3_6G038880 Cucumis sativus L. HOM05D000001 ORTHO05D000003 6.0e-06 54.3 94 31.9
Lj1P892T36 Lonicera japonica HOM05D000001 ORTHO05D000003 6.0e-06 54.3 83 32.5
Nitab4.5_0004728g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.0e-06 54.3 82 34.1
Nitab4.5_0009485g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.0e-06 54.3 82 34.1
Os04g0218100 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 6.0e-06 54.3 96 36.5
Os05g0305300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 6.0e-06 54.3 96 36.5
Os07g0588100 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009054 6.0e-06 54.3 79 35.4
Potri.002G027800 Populus trichocarpa HOM05D000001 ORTHO05D009054 6.0e-06 54.3 79 32.9
Hund15501 Selenicereus undatus HOM05D000001 ORTHO05D000003 6.0e-06 54.3 85 29.4
TPR.G14783 Trifolium pratense HOM05D000001 ORTHO05D000003 6.0e-06 54.3 81 33.3
CAN.G637.48 Capsicum annuum HOM05D000001 ORTHO05D000003 7.8e-06 53.9 82 34.1
Thhalv10012670m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 7.8e-06 53.9 97 34.0
QL10p050762 Quercus lobata HOM05D000001 ORTHO05D009054 7.8e-06 53.9 79 32.9
PGSC0003DMG400022163 Solanum tuberosum HOM05D000001 ORTHO05D000003 7.8e-06 53.9 97 30.9
TWI77G0105 Tripterygium wilfordii HOM05D000001 ORTHO05D009340 7.8e-06 53.9 85 30.6


User provided reference genes

Program Settings