Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.1e-50 203.0 100 100.0
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.5e-39 163.3 108 79.6
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.8e-33 143.7 110 62.7
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 6.6e-32 140.6 95 71.6
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 7.3e-31 137.1 94 71.3
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 9.0e-29 130.2 75 85.3
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.2e-25 119.8 103 59.2
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 5.6e-23 110.9 107 53.3
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.3e-22 109.8 97 55.7
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.1e-21 106.7 80 61.2
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.8e-21 105.9 95 55.8
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.8e-21 105.9 81 63.0
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.4e-21 105.5 82 58.5
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 3.1e-21 105.1 77 63.6
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.1e-21 105.1 99 49.5
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 6.9e-21 104.0 87 56.3
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 2.0e-20 102.4 77 61.0
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.6e-20 102.1 98 52.0
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 4.5e-20 101.3 82 59.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 4.5e-20 101.3 89 51.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.7e-19 99.4 78 56.4
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.7e-19 99.4 97 50.5
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.7e-19 99.4 98 53.1
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 4.9e-19 97.8 99 54.5
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 6.4e-19 97.4 99 48.5
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 8.4e-19 97.1 99 46.5
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.1e-18 96.7 82 59.8
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.1e-18 96.7 96 47.9
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-18 96.7 95 48.4
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.1e-18 96.7 99 54.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.1e-18 96.7 73 61.6
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.4e-18 96.3 100 50.0
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.9e-18 95.9 82 58.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.9e-18 95.9 82 58.5
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.4e-18 95.5 99 54.5
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.2e-18 95.1 99 53.5
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 4.2e-18 94.7 97 49.5
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.2e-18 94.7 96 50.0
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 4.2e-18 94.7 82 56.1
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 5.4e-18 94.4 78 53.8
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 5.4e-18 94.4 99 49.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 5.4e-18 94.4 98 51.0
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 7.1e-18 94.0 80 53.8
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 9.3e-18 93.6 100 51.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.7e-17 92.0 99 48.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 3.5e-17 91.7 99 52.5
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.5e-17 91.7 96 46.9
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.5e-17 91.7 99 44.4
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 7.9e-17 90.5 82 56.1
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.0e-16 90.1 87 51.7
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.0e-16 90.1 93 50.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.3e-16 89.7 99 43.4
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.3e-16 89.7 80 52.5
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.8e-16 89.4 82 58.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.8e-16 89.4 99 43.4
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.8e-16 89.4 104 44.2
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.3e-16 89.0 98 45.9
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.3e-16 89.0 82 56.1
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.3e-16 89.0 100 50.0
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.3e-16 89.0 102 49.0
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.0e-16 88.6 99 46.5
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.0e-16 88.6 88 52.3
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.9e-16 88.2 80 53.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.1e-16 87.8 99 49.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.7e-16 87.4 82 54.9
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 8.7e-16 87.0 86 46.5
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 8.7e-16 87.0 100 52.0
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.1e-15 86.7 87 47.1
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.1e-15 86.7 75 52.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.5e-15 86.3 104 51.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 2.5e-15 85.5 77 51.9
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-15 85.5 102 48.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-15 85.5 102 48.0
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-15 85.5 102 48.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 3.3e-15 85.1 75 53.3
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 3.3e-15 85.1 80 51.2
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 3.3e-15 85.1 104 42.3
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 4.3e-15 84.7 97 49.5
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.6e-15 84.3 99 48.5
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 5.6e-15 84.3 80 48.8
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 9.6e-15 83.6 98 49.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 9.6e-15 83.6 100 47.0
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 9.6e-15 83.6 83 50.6
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.3e-14 83.2 82 50.0
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-14 82.0 97 47.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 4.8e-14 81.3 98 45.9
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 6.2e-14 80.9 82 53.7
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 6.2e-14 80.9 82 53.7
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 6.2e-14 80.9 98 50.0
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 8.1e-14 80.5 82 52.4
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.1e-13 80.1 80 48.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-13 79.7 77 49.4
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-13 79.7 77 49.4
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-13 79.7 77 49.4
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.4e-13 79.7 96 42.7
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.8e-13 79.3 80 52.5
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.8e-13 79.3 98 48.0
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.8e-13 79.3 80 52.5
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.8e-13 79.3 96 42.7
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 4.0e-13 78.2 85 43.5
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 4.0e-13 78.2 102 47.1
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 5.3e-13 77.8 98 46.9
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 5.3e-13 77.8 102 44.1
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 6.9e-13 77.4 102 44.1
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 9.0e-13 77.0 99 48.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 9.0e-13 77.0 102 48.0
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 9.0e-13 77.0 86 44.2
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.2e-12 76.6 61 59.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.6e-12 75.5 74 45.9
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 4.5e-12 74.7 82 51.2
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 7.6e-12 73.9 105 42.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 7.6e-12 73.9 100 41.0
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.7e-11 72.8 86 43.0
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.9e-11 72.0 123 40.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.4e-10 69.7 75 44.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-10 69.7 137 35.0
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.4e-10 69.7 110 37.3
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 3.2e-10 68.6 73 38.4
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 7.1e-10 67.4 77 45.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 7.1e-10 67.4 84 42.9
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.6e-09 66.2 77 49.4
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 7.9e-09 63.9 69 42.0
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.8e-08 62.8 106 36.8
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 8.7e-08 60.5 67 43.3
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.7e-07 57.8 73 32.9
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.3e-06 56.6 73 34.2
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 2.1e-06 55.8 79 35.4
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 8.2e-06 53.9 92 39.1


User provided reference genes

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