Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 3.2e-110 402.5 338 100.0
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 5.0e-108 395.2 346 93.6
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.7e-87 327.0 347 82.4
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 8.4e-87 324.7 347 73.5
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 1.7e-84 317.0 346 63.9
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 9.0e-81 304.7 347 68.0
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 3.4e-80 302.8 345 62.9
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 1.3e-79 300.8 347 59.9
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.7e-79 300.4 345 70.4
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 2.2e-79 300.1 345 70.4
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 3.8e-79 299.3 347 57.6
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.9e-79 298.9 345 70.7
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.4e-78 297.4 346 50.3
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 1.9e-78 297.0 331 74.9
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.4e-78 296.6 348 69.8
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 3.2e-78 296.2 345 70.1
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 5.4e-78 295.4 346 71.4
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 7.1e-78 295.0 348 69.8
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.6e-77 293.9 351 69.2
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 2.1e-77 293.5 347 71.5
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.7e-77 293.1 345 69.3
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.3e-76 290.0 347 60.8
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 5.1e-76 288.9 348 61.5
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 4.8e-74 282.3 342 71.6
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 1.4e-73 280.8 378 49.5
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 1.4e-73 280.8 378 49.5
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 2.4e-73 280.0 350 76.0
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 3.1e-73 279.6 348 61.2
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 3.1e-73 279.6 347 67.7
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 1.2e-72 277.7 349 69.1
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 1.5e-72 277.3 373 51.5
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 4.9e-71 272.3 347 70.9
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 1.9e-70 270.4 372 57.3
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 3.2e-70 269.6 344 75.6
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 4.2e-70 269.2 349 55.9
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 7.1e-70 268.5 346 66.5
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 6.0e-69 265.4 325 68.0
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 1.0e-68 264.6 345 66.7
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 3.9e-68 262.7 348 59.2
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 5.1e-68 262.3 344 66.3
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 6.7e-68 261.9 348 66.4
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 8.7e-68 261.5 344 73.8
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 1.9e-67 260.4 344 73.8
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 5.6e-67 258.8 349 72.5
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 5.6e-67 258.8 341 66.9
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 9.6e-67 258.1 349 65.6
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 1.8e-65 253.8 354 64.4
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 4.0e-65 252.7 349 73.1
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 6.9e-65 251.9 322 62.4
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 1.5e-64 250.8 347 59.9
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 7.6e-64 248.4 346 63.9
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 1.7e-63 247.3 367 61.9
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 4.9e-63 245.7 377 60.7
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 1.1e-62 244.6 357 61.9
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 1.1e-62 244.6 357 55.2
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 1.9e-62 243.8 341 66.0
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 3.2e-62 243.0 345 63.5
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 4.2e-62 242.7 346 62.7
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 4.2e-62 242.7 357 61.9
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 4.2e-62 242.7 364 54.7
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 5.5e-62 242.3 357 52.7
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 9.3e-62 241.5 341 64.8
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 7.9e-61 238.4 347 63.4
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 1.1e-59 234.6 357 61.1
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 1.5e-59 234.2 346 53.5
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 5.7e-59 232.3 365 59.5
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 2.8e-58 229.9 360 60.6
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 6.3e-58 228.8 347 49.9
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 1.1e-57 228.0 353 61.2
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 1.4e-57 227.6 329 43.5
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.2e-56 224.6 341 69.5
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 5.9e-56 222.2 339 62.2
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 8.5e-55 218.4 358 66.5
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 8.5e-55 218.4 358 66.5
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.4e-54 217.6 142 78.9
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.9e-54 217.2 238 81.5
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 7.9e-53 211.8 362 58.6
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 1.7e-50 204.1 369 58.0
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 3.7e-50 203.0 145 69.0
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 2.4e-49 200.3 136 74.3
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 3.1e-49 199.9 370 56.5
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 6.9e-49 198.7 241 76.8
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 8.5e-47 191.8 141 66.7
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 8.5e-47 191.8 319 40.1
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 1.4e-44 184.5 239 75.7
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 6.7e-44 182.2 276 59.4
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.1e-43 181.4 276 56.2
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 2.0e-43 180.6 401 59.9
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 5.7e-43 179.1 145 62.1
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 1.3e-42 177.9 332 51.2
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 6.9e-41 172.2 144 62.5
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 3.2e-38 163.3 144 61.1
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 5.5e-38 162.5 417 38.8
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 2.7e-37 160.2 306 59.5
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 1.0e-36 158.3 307 67.4
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 1.3e-34 151.4 287 53.0
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 2.2e-34 150.6 346 57.8
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 2.8e-34 150.2 144 56.9
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 1.0e-31 141.7 337 47.2
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 1.1e-30 138.3 286 59.8
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 1.5e-30 137.9 287 59.9
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 7.2e-30 135.6 286 59.8
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 4.0e-28 129.8 265 60.0
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.5e-27 127.9 345 44.9
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 1.4e-25 121.3 84 70.2
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 5.2e-20 102.8 127 66.9
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 2.6e-19 100.5 57 80.7
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 2.6e-19 100.5 57 80.7
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 1.2e-13 81.6 251 26.3
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 2.8e-10 70.5 38 86.8
Medtr1g054600 Medicago truncatula HOM05D002729 ORTHO05D003163 6.6e-07 59.3 38 65.8
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 1.5e-06 58.2 39 69.2
unitig_736.g22302 Utricularia gibba HOM05D000180 ORTHO05D009050 7.3e-06 55.8 41 65.9


User provided reference genes

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