Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035626 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.1e-129 465.7 233 100.0
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 5.6e-106 387.9 202 96.0
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 5.0e-99 364.8 202 91.6
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.1e-98 363.6 185 97.3
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.6e-97 359.8 202 91.6
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 9.2e-77 290.8 202 70.8
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 4.0e-72 275.4 202 69.3
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 7.6e-71 271.2 213 65.7
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 7.6e-71 271.2 191 71.2
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 3.0e-67 259.2 230 62.6
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 2.8e-65 252.7 183 71.0
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 2.4e-64 249.6 228 61.8
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 4.5e-63 245.4 191 63.9
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 7.6e-63 244.6 210 61.0
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 7.6e-63 244.6 210 61.0
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 8.4e-62 241.1 203 62.6
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 1.9e-61 240.0 183 67.2
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 1.9e-61 240.0 198 62.6
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 2.4e-61 239.6 188 66.0
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 7.1e-61 238.0 202 61.9
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 7.9e-60 234.6 202 61.9
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 1.5e-58 230.3 205 62.0
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 1.9e-58 229.9 203 61.1
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 2.1e-57 226.5 201 60.7
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 2.8e-57 226.1 214 56.1
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 3.7e-57 225.7 202 58.9
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 1.1e-56 224.2 193 59.6
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 3.1e-56 222.6 193 59.1
CSS0002123 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 5.3e-56 221.9 123 91.1
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 9.0e-56 221.1 204 58.8
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 4.5e-55 218.8 148 73.6
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 4.5e-55 218.8 202 58.9
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 7.6e-55 218.0 191 59.7
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 1.3e-54 217.2 191 61.8
CSS0002615 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.8e-54 215.7 112 95.5
CSS0032761 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.4e-54 214.9 123 89.4
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 1.1e-53 214.2 191 58.6
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 3.2e-53 212.6 181 61.9
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 3.5e-52 209.1 198 58.6
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 4.6e-52 208.8 191 56.5
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 6.0e-52 208.4 191 57.1
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 1.0e-51 207.6 158 66.5
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 1.0e-51 207.6 204 54.4
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 5.1e-51 205.3 202 57.4
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 5.1e-51 205.3 185 60.5
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.9e-50 203.4 147 70.7
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 5.6e-50 201.8 208 55.8
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 5.6e-50 201.8 191 57.6
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 7.4e-50 201.4 211 53.1
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 7.4e-50 201.4 191 57.6
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 3.7e-49 199.1 218 52.8
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 4.8e-49 198.7 191 57.1
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 8.2e-49 198.0 207 55.6
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 2.4e-48 196.4 191 56.0
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 4.0e-48 195.7 147 67.3
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 4.0e-48 195.7 187 57.2
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 6.9e-48 194.9 192 55.7
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 6.9e-48 194.9 208 51.0
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 9.0e-48 194.5 187 57.2
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 9.0e-48 194.5 202 51.5
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 5.8e-47 191.8 219 49.8
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.7e-46 190.3 190 55.3
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 1.7e-46 190.3 172 60.5
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 2.2e-46 189.9 214 48.1
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 2.2e-46 189.9 189 52.9
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 2.9e-46 189.5 219 49.8
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 4.9e-46 188.7 179 54.7
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 6.5e-46 188.3 206 51.9
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 1.9e-45 186.8 187 55.1
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 9.3e-45 184.5 202 51.5
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 9.3e-45 184.5 203 51.7
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 1.2e-44 184.1 169 59.2
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 3.5e-44 182.6 202 51.0
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 6.0e-44 181.8 201 49.8
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 7.9e-44 181.4 205 51.2
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 7.9e-44 181.4 202 51.0
CSS0025043 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.3e-43 180.6 112 82.1
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 1.8e-43 180.3 201 52.2
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 2.3e-43 179.9 199 51.8
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 2.3e-43 179.9 173 57.8
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 1.5e-42 177.2 202 50.5
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 1.9e-42 176.8 205 49.3
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 3.3e-42 176.0 199 50.8
CSS0041486 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 9.7e-42 174.5 111 81.1
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 1.3e-41 174.1 178 54.5
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 1.6e-41 173.7 135 60.0
PGSC0003DMG402001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 1.6e-41 173.7 110 77.3
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 2.2e-41 173.3 201 49.3
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 3.7e-41 172.6 201 49.3
CSS0030035 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.7e-41 172.6 112 80.4
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 8.2e-41 171.4 206 50.0
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 1.8e-40 170.2 209 47.8
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.4e-40 169.9 135 61.5
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 6.9e-40 168.3 216 41.2
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 5.9e-39 165.2 134 61.9
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 2.9e-38 162.9 134 61.2
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 4.2e-37 159.1 152 55.9
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 1.2e-36 157.5 149 57.0
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 1.8e-35 153.7 151 55.6
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 3.0e-35 152.9 255 40.4
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 3.0e-35 152.9 121 63.6
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 1.5e-34 150.6 133 55.6
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 6.3e-33 145.2 115 59.1
MSTRG.2876 Avicennia marina HOM05D003515 ORTHO05D004347 1.8e-32 143.7 110 63.6
Cpa.g.sc30.108 Carica papaya HOM05D003515 ORTHO05D010193 2.4e-32 143.3 146 53.4
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 2.4e-32 143.3 137 52.6
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 5.3e-32 142.1 135 56.3
CSS0004888 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-28 131.0 87 77.0
CSS0041884 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.6e-28 130.6 86 80.2
Sopen01g017590 Solanum pennellii HOM05D003515 ORTHO05D004347 1.8e-27 127.1 92 68.5
SHI28056 Sapria himalayana HOM05D003515 ORTHO05D004347 2.3e-27 126.7 107 57.9
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 1.5e-26 124.0 134 50.7
Phvul.007G100966 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 4.4e-26 122.5 81 70.4
CSS0039150 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.4e-23 112.8 87 71.3
arahy.Tifrunner.gnm1.ann1.E07S37 Arachis hypogaea HOM05D003509 ORTHO05D001340 1.3e-22 110.9 92 60.9
RcHm_v2.0_Chr5g0021121 Rosa chinensis HOM05D003515 ORTHO05D004347 6.5e-22 108.6 196 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 1.8e-19 100.5 133 41.4
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.4e-16 90.9 151 35.1
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 1.7e-14 84.0 111 45.9
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 3.8e-14 82.8 174 32.8
CSS0029313 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.7e-12 76.6 75 58.7
SMO222G0016 Selaginella moellendorffii HOM05D010282 ORTHO05D004347 1.7e-09 67.4 139 37.4
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 4.1e-08 62.8 42 71.4


User provided reference genes

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