Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035623 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.1e-119 433.3 225 100.0
CSS0035791 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 4.9e-107 391.3 226 92.5
CSS0008431 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.4e-93 346.7 230 83.0
CSS0033199 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 5.3e-45 185.3 115 87.8
CSS0010716 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 4.6e-41 172.2 141 73.8
Dinv22062 Davidia involucrata HOM05D002859 ORTHO05D003120 1.6e-17 94.0 181 39.2
vmacro00921 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 4.7e-17 92.4 116 52.6
vmacro00954 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 4.7e-17 92.4 116 52.6
Rhsim12G0001500 Rhododendron simsii HOM05D002859 ORTHO05D003120 1.3e-14 84.3 76 65.8
Actinidia01539 Actinidia chinensis HOM05D002859 ORTHO05D003120 2.2e-14 83.6 116 50.9
DCAR_014056 Daucus carota HOM05D002859 ORTHO05D003120 2.8e-14 83.2 47 78.7
Phvul.011G003500 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 6.3e-14 82.0 71 60.6
Ca_25698_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 1.1e-13 81.3 138 42.0
TPR.G25997 Trifolium pratense HOM05D002859 ORTHO05D003120 1.1e-13 81.3 90 52.2
arahy.Tifrunner.gnm1.ann1.FCJ5UL Arachis hypogaea HOM05D002859 ORTHO05D003120 1.4e-13 80.9 97 49.5
Medtr4g035350 Medicago truncatula HOM05D002859 ORTHO05D003120 1.8e-13 80.5 89 51.7
Oeu028619.1 Olea europaea HOM05D002859 ORTHO05D003120 1.8e-13 80.5 90 54.4
GSVIVG01037132001 Vitis vinifera HOM05D002859 ORTHO05D003120 2.4e-13 80.1 48 79.2
Psat7g149800 Pisum sativum HOM05D002859 ORTHO05D003120 3.1e-13 79.7 107 48.6
Cpa.g.sc249.14 Carica papaya HOM05D002859 ORTHO05D003120 4.1e-13 79.3 112 47.3
Cc10_g16150 Coffea canephora HOM05D002859 ORTHO05D003120 7.0e-13 78.6 154 39.6
VMungo1127G0800 Vigna mungo HOM05D002859 ORTHO05D003120 7.0e-13 78.6 57 64.9
Gohir.D02G103500 Gossypium hirsutum HOM05D002859 ORTHO05D003120 9.1e-13 78.2 52 69.2
Gorai.005G117600 Gossypium raimondii HOM05D002859 ORTHO05D003120 9.1e-13 78.2 52 69.2
Nitab4.5_0003598g0110 Nicotiana tabacum HOM05D002859 ORTHO05D003120 9.1e-13 78.2 59 71.2
arahy.Tifrunner.gnm1.ann1.J0PFQP Arachis hypogaea HOM05D002859 ORTHO05D003120 1.2e-12 77.8 100 46.0
CiPaw.04G008400 Carya illinoinensis HOM05D002859 ORTHO05D003120 1.2e-12 77.8 152 42.1
Eucgr.F04091 Eucalyptus grandis HOM05D002859 ORTHO05D003120 2.0e-12 77.0 98 50.0
MSTRG.25506 Avicennia marina HOM05D002859 ORTHO05D003120 2.6e-12 76.6 83 53.0
Thecc.08G165600 Theobroma cacao HOM05D002859 ORTHO05D003120 3.5e-12 76.3 52 69.2
Gohir.A02G088200 Gossypium hirsutum HOM05D002859 ORTHO05D003120 4.5e-12 75.9 53 67.9
TAR381G0145 Trochodendron aralioides HOM05D002859 ORTHO05D003120 4.5e-12 75.9 191 40.8
Atru.chr13.2591 Acer truncatum HOM05D002859 ORTHO05D003120 5.9e-12 75.5 101 46.5
TWI12G1452 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 5.9e-12 75.5 113 45.1
CARHR064600 Cardamine hirsuta HOM05D002859 ORTHO05D003120 7.7e-12 75.1 53 77.4
Lj7C415G8 Lonicera japonica HOM05D002859 ORTHO05D003120 1.3e-11 74.3 115 46.1
AL2G30910 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 2.9e-11 73.2 129 43.4
Lalb_Chr01g0000171 Lupinus albus HOM05D002859 ORTHO05D003120 2.9e-11 73.2 61 59.0
SalBow7G1103 Salvia bowleyana HOM05D002859 ORTHO05D003120 2.9e-11 73.2 87 48.3
COL.COLO4_25054 Corchorus olitorius HOM05D002859 ORTHO05D003120 3.8e-11 72.8 79 54.4
Aa31LG4G9230 Aethionema arabicum HOM05D002859 ORTHO05D003120 5.0e-11 72.4 109 45.0
EL10Ac1g01291 Beta vulgaris HOM05D002859 ORTHO05D003120 5.0e-11 72.4 50 66.0
Thhalv10019211m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 5.0e-11 72.4 53 73.6
Lsat_1_v5_gn_4_132200 Lactuca sativa HOM05D002859 ORTHO05D003120 5.0e-11 72.4 183 35.5
THA.LOC104809758 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 5.0e-11 72.4 42 81.0
Nitab4.5_0004387g0010 Nicotiana tabacum HOM05D002859 ORTHO05D003120 6.5e-11 72.0 79 54.4
Ah.05g170490 Amaranthus hybridus HOM05D002859 ORTHO05D003120 8.5e-11 71.6 193 34.2
Migut.C01404 Erythranthe guttata HOM05D002859 ORTHO05D003120 8.5e-11 71.6 90 48.9
Nitab4.5_0000079g0100 Nicotiana tabacum HOM05D002859 ORTHO05D003120 8.5e-11 71.6 82 53.7
Duzib177G0860 Durio zibethinus HOM05D002859 ORTHO05D003120 1.1e-10 71.2 45 71.1
Lj3g0004795 Lotus japonicus HOM05D002859 ORTHO05D003120 1.1e-10 71.2 49 63.3
Ciclev10022444m.g Citrus clementina HOM05D002859 ORTHO05D003120 1.9e-10 70.5 115 46.1
AT1G71310 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 2.5e-10 70.1 82 56.1
Solyc08g005060.3 Solanum lycopersicum HOM05D002859 ORTHO05D003120 2.5e-10 70.1 79 55.7
BcaC08g45785 Brassica carinata HOM05D002859 ORTHO05D003120 3.2e-10 69.7 56 64.3
Nitab4.5_0009853g0030 Nicotiana tabacum HOM05D002859 ORTHO05D003120 3.2e-10 69.7 80 57.5
A07p30790 Brassica napus HOM05D002859 ORTHO05D003120 4.2e-10 69.3 56 64.3
C06p35690 Brassica napus HOM05D002859 ORTHO05D003120 4.2e-10 69.3 56 64.3
BolC6t38692H Brassica oleracea HOM05D002859 ORTHO05D003120 4.2e-10 69.3 56 64.3
BraA07t30716Z Brassica rapa HOM05D002859 ORTHO05D003120 4.2e-10 69.3 56 64.3
RcHm_v2.0_Chr6g0249441 Rosa chinensis HOM05D002859 ORTHO05D003120 4.2e-10 69.3 89 46.1
Sopen08g001080 Solanum pennellii HOM05D002859 ORTHO05D003120 4.2e-10 69.3 79 55.7
CDE02G3179 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 5.5e-10 68.9 49 73.5
Sabra19G0082000 Salix brachista HOM05D002859 ORTHO05D003120 5.5e-10 68.9 144 38.9
Sp5g26480 Schrenkiella parvula HOM05D002859 ORTHO05D003120 5.5e-10 68.9 56 64.3
PGSC0003DMG400001162 Solanum tuberosum HOM05D002859 ORTHO05D003120 5.5e-10 68.9 79 57.0
Haze_14010 Corylus avellana HOM05D002859 ORTHO05D003120 7.2e-10 68.6 167 36.5
HanXRQChr09g0266881 Helianthus annuus HOM05D002859 ORTHO05D003120 9.4e-10 68.2 37 81.1
MBI06_g47881_MAGBIO Magnolia biondii HOM05D002859 ORTHO05D003120 9.4e-10 68.2 100 46.0
MD05G1000800 Malus domestica HOM05D002859 ORTHO05D003120 9.4e-10 68.2 77 54.5
SGA_v2.0_scaffold118G32642 Striga asiatica HOM05D002859 ORTHO05D003120 9.4e-10 68.2 75 50.7
Carub.0002s1818 Capsella rubella HOM05D002859 ORTHO05D003120 1.2e-09 67.8 74 52.7
ECA232G0801 Erigeron canadensis HOM05D002859 ORTHO05D003120 1.2e-09 67.8 105 41.9
Potri.019G068500 Populus trichocarpa HOM05D002859 ORTHO05D003120 1.2e-09 67.8 115 44.3
Sc05g0005770 Simmondsia chinensis HOM05D002859 ORTHO05D003120 1.2e-09 67.8 69 53.6
ATR1089G066 Amborella trichopoda HOM05D002859 ORTHO05D003120 2.7e-09 66.6 49 65.3
Nitab4.5_0001106g0150 Nicotiana tabacum HOM05D002859 ORTHO05D003120 3.6e-09 66.2 78 53.8
AUR62013398 Chenopodium quinoa HOM05D002859 ORTHO05D003120 4.7e-09 65.9 126 38.1
Nn5g27200 Nelumbo nucifera HOM05D002859 ORTHO05D003120 4.7e-09 65.9 183 34.4
Prupe.8G001500 Prunus persica HOM05D002859 ORTHO05D003120 4.7e-09 65.9 73 53.4
BcaB03g15599 Brassica carinata HOM05D002859 ORTHO05D003120 6.1e-09 65.5 88 46.6
Zm00001eb366350 Zea mays HOM05D002859 ORTHO05D003120 1.4e-08 64.3 70 42.9
FvH4_2g00170 Fragaria vesca HOM05D002859 ORTHO05D003120 2.3e-08 63.5 51 64.7
FAN24G1423 Fragaria x ananassa HOM05D002859 ORTHO05D003120 2.3e-08 63.5 51 64.7
Glyma.09G234000 Glycine max HOM05D002859 ORTHO05D003120 3.0e-08 63.2 62 56.5
Manes.05G123347 Manihot esculenta HOM05D002859 ORTHO05D003120 4.0e-08 62.8 98 44.9
PSO782G5460 Papaver somniferum HOM05D002859 ORTHO05D003120 4.0e-08 62.8 115 44.3
Zm00001eb145940 Zea mays HOM05D002859 ORTHO05D003120 4.0e-08 62.8 75 40.0
FAN25G0127 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.5e-07 60.8 100 44.0
FAN21G0151 Fragaria x ananassa HOM05D002859 ORTHO05D003120 2.6e-07 60.1 69 47.8
Aqoxy6G00036 Aquilegia oxysepala HOM05D002859 ORTHO05D003120 4.4e-07 59.3 92 45.7
HPP92_001196 Vanilla planifolia HOM05D002859 ORTHO05D003120 4.4e-07 59.3 42 64.3
CANSAT54G1349 Cannabis sativa HOM05D002859 ORTHO05D003120 5.7e-07 58.9 157 35.0
PSO063G7280 Papaver somniferum HOM05D002859 ORTHO05D003120 1.3e-06 57.8 84 44.0
FAN16G3232 Fragaria x ananassa HOM05D002859 ORTHO05D003120 2.8e-06 56.6 69 46.4
QL09p001171 Quercus lobata HOM05D002859 ORTHO05D003120 2.8e-06 56.6 115 35.7
SMO358G0157 Selaginella moellendorffii HOM05D002859 ORTHO05D003120 3.7e-06 56.2 106 33.0
Mapoly0077s0052 Marchantia polymorpha HOM05D002859 ORTHO05D003120 4.8e-06 55.8 81 38.3


User provided reference genes

Program Settings