Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 3.1e-281 971.1 469 100.0
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.2e-155 553.9 372 77.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 9.4e-145 517.7 492 58.7
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.3e-141 507.3 493 57.4
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 6.7e-135 485.0 489 56.6
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 8.8e-135 484.6 499 56.3
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 8.2e-125 451.4 475 54.3
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.6e-123 446.4 496 52.4
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.3e-117 427.6 492 50.0
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 5.3e-116 422.2 403 58.3
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 7.7e-115 418.3 474 52.5
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.2e-112 411.0 485 48.2
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.8e-111 407.1 491 47.3
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 3.4e-110 402.9 497 49.1
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 2.7e-107 393.3 491 47.0
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 6.6e-106 388.7 488 47.7
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 9.5e-105 384.8 497 47.1
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.0e-103 381.3 423 53.0
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 3.0e-103 379.8 480 48.3
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.2e-102 377.9 478 47.9
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.3e-101 374.4 500 46.0
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 3.5e-99 366.3 495 45.5
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 4.5e-99 365.9 499 45.3
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 4.5e-99 365.9 501 45.5
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.0e-98 364.8 495 45.1
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 3.3e-97 359.8 506 46.2
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 5.6e-97 359.0 476 45.6
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 5.6e-97 359.0 501 43.5
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 7.3e-97 358.6 518 44.4
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 2.1e-96 357.1 466 46.1
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 6.1e-96 355.5 461 47.7
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.1e-96 355.5 456 46.3
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.4e-95 354.4 461 47.7
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.4e-95 354.4 513 44.6
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.4e-95 354.4 488 45.3
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 2.3e-95 353.6 485 45.8
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 5.2e-95 352.4 528 44.1
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.8e-95 352.1 455 45.1
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 3.4e-94 349.7 416 49.0
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.3e-93 347.8 471 45.9
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 4.9e-93 345.9 487 44.4
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 8.3e-93 345.1 502 44.8
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.1e-92 344.7 485 44.7
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.9e-92 344.0 546 42.1
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 4.1e-92 342.8 487 43.9
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 4.1e-92 342.8 480 45.0
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 5.4e-92 342.4 440 46.4
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 9.2e-92 341.7 487 43.7
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 2.0e-91 340.5 487 44.1
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 4.6e-91 339.3 467 44.5
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 6.0e-91 339.0 497 43.5
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 7.8e-91 338.6 487 44.1
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 7.8e-91 338.6 448 46.2
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 1.0e-90 338.2 513 43.1
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 5.0e-90 335.9 433 47.6
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.9e-89 334.0 511 43.6
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.8e-88 330.1 512 42.8
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 2.8e-88 330.1 472 44.7
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 2.8e-88 330.1 487 43.7
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 8.0e-88 328.6 492 43.9
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 1.4e-87 327.8 493 42.8
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 1.8e-87 327.4 512 43.2
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.8e-87 327.4 496 41.9
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 4.0e-87 326.2 513 40.9
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 9.8e-86 321.6 486 41.6
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.9e-85 320.1 478 45.2
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 3.7e-85 319.7 409 48.7
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 7.1e-84 315.5 426 45.8
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 2.1e-83 313.9 489 41.3
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 1.0e-82 311.6 431 43.9
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.2e-80 304.7 457 43.5
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 6.8e-79 298.9 460 42.2
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.4e-76 291.2 511 39.3
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.4e-76 291.2 526 36.9
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 3.5e-75 286.6 512 37.3
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 3.9e-74 283.1 460 40.2
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 6.6e-74 282.3 487 37.8
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.6e-74 282.0 388 45.1
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.1e-73 281.6 446 40.1
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 4.3e-73 279.6 446 39.0
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 9.6e-73 278.5 450 39.6
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.2e-72 278.1 457 39.4
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.6e-72 277.7 434 39.6
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 6.2e-72 275.8 498 36.7
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 6.2e-72 275.8 462 40.3
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 6.8e-71 272.3 436 40.4
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 6.8e-71 272.3 441 41.7
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 3.4e-70 270.0 456 38.4
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 3.4e-70 270.0 456 38.4
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 1.7e-69 267.7 446 39.5
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.7e-69 267.7 418 41.6
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 7.1e-68 262.3 462 37.9
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.2e-67 261.5 445 38.4
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.2e-67 261.5 467 36.8
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 6.6e-66 255.8 457 38.1
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 8.7e-66 255.4 453 40.8
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 8.4e-61 238.8 455 36.7
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.1e-60 238.4 359 43.5
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 3.6e-56 223.4 365 41.4
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 1.1e-55 221.9 251 53.0
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.1e-49 201.8 458 32.5
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 3.1e-47 193.7 436 33.9
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 2.0e-46 191.0 548 29.9
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 3.2e-44 183.7 548 28.1
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 8.7e-34 149.1 522 26.1
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.6e-32 144.8 125 61.6
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.6e-32 144.8 234 41.0
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 2.2e-32 144.4 195 47.2
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 4.1e-31 140.2 129 58.1
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 3.2e-28 130.6 157 47.8
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 5.5e-28 129.8 132 53.0
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 7.2e-28 129.4 151 53.6
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 3.8e-21 107.1 94 61.7
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.8e-16 90.9 208 32.2
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 5.9e-14 83.2 103 45.6
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 4.7e-11 73.6 79 46.8
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 8.8e-10 69.3 71 54.9
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 7.0e-07 59.7 130 31.5


User provided reference genes

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