Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.6e-104 380.9 191 100.0
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.8e-79 298.9 151 98.0
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-72 276.2 150 87.3
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-72 276.2 150 87.3
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 8.1e-71 270.8 150 87.3
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.4e-70 270.0 150 87.3
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-70 270.0 150 85.3
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 2.4e-70 269.2 150 86.7
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.4e-70 269.2 150 87.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 5.3e-70 268.1 150 86.7
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 6.9e-70 267.7 150 86.0
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 9.0e-70 267.3 150 85.3
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.0e-69 266.2 171 78.4
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 2.6e-69 265.8 150 87.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 3.4e-69 265.4 154 83.1
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 3.4e-69 265.4 150 84.7
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.8e-69 264.6 148 87.2
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.8e-69 264.6 150 86.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 5.8e-69 264.6 150 84.7
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.9e-69 263.8 150 84.0
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.9e-69 263.8 150 84.7
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 9.9e-69 263.8 179 76.0
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-68 263.5 150 86.0
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.7e-68 263.1 150 84.0
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-68 262.7 150 86.0
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.2e-68 262.7 150 84.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 2.9e-68 262.3 150 84.0
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-68 261.9 150 84.0
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 3.8e-68 261.9 150 84.0
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 3.8e-68 261.9 150 84.7
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 3.8e-68 261.9 150 84.7
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 4.9e-68 261.5 150 83.3
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 4.9e-68 261.5 150 83.3
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 4.9e-68 261.5 150 84.7
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.9e-68 261.5 150 84.0
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.1e-67 260.4 150 84.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.4e-67 260.0 150 80.7
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.4e-67 260.0 150 80.7
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.4e-67 260.0 150 83.3
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.9e-67 259.6 150 82.0
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 2.4e-67 259.2 150 82.0
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.4e-67 259.2 150 83.3
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 4.2e-67 258.5 150 82.0
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 4.2e-67 258.5 150 80.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.4e-67 258.1 151 83.4
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 7.1e-67 257.7 150 83.3
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.1e-67 257.7 153 80.4
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 7.1e-67 257.7 150 82.7
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 7.1e-67 257.7 150 82.7
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 9.3e-67 257.3 150 80.0
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 9.3e-67 257.3 145 83.4
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.2e-66 256.9 150 82.7
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 1.2e-66 256.9 150 83.3
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.6e-66 256.5 150 80.0
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.6e-66 256.5 152 79.6
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.1e-66 256.1 150 82.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 2.1e-66 256.1 151 82.1
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.7e-66 255.8 150 83.3
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.5e-66 255.4 152 81.6
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.5e-66 255.4 150 82.0
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 4.6e-66 255.0 145 85.5
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.6e-66 255.0 151 80.1
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 6.0e-66 254.6 150 80.7
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 7.9e-66 254.2 150 80.7
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 7.9e-66 254.2 150 80.0
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 7.9e-66 254.2 149 81.9
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.3e-65 253.4 150 81.3
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.3e-65 253.4 150 79.3
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.3e-65 253.4 150 79.3
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.3e-65 253.4 150 81.3
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.8e-65 253.1 150 78.7
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 1.8e-65 253.1 150 82.7
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 2.3e-65 252.7 150 80.0
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 3.0e-65 252.3 153 81.0
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 5.1e-65 251.5 155 80.0
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.7e-65 251.1 150 80.7
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 8.7e-65 250.8 150 82.0
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-64 250.4 172 74.4
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.5e-64 249.2 152 80.3
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.5e-64 249.2 152 80.3
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.5e-64 249.2 152 80.3
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 3.3e-64 248.8 150 79.3
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 5.6e-64 248.1 173 71.1
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 5.6e-64 248.1 152 80.3
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 9.6e-64 247.3 150 80.0
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.3e-63 246.9 152 79.6
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.1e-63 246.1 150 80.0
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.1e-63 246.1 150 79.3
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 8.1e-63 244.2 152 79.6
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.4e-62 243.4 151 75.5
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.8e-62 243.0 153 77.1
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-62 243.0 150 80.0
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.8e-62 243.0 150 74.7
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 5.3e-62 241.5 150 78.7
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.2e-61 240.4 156 70.5
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.5e-61 240.0 150 76.0
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.5e-61 240.0 150 76.0
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 2.6e-61 239.2 157 70.1
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.8e-61 238.0 150 73.3
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.3e-60 236.9 150 72.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.3e-60 236.9 150 72.0
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.3e-60 236.9 148 79.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.3e-60 236.9 149 75.8
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.7e-60 236.5 150 72.7
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.7e-60 236.5 150 72.0
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.7e-60 236.5 148 75.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 4.9e-60 235.0 150 72.7
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 4.9e-60 235.0 150 72.7
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.1e-59 233.8 150 73.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.1e-59 233.8 150 72.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.4e-59 233.4 150 72.0
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.4e-59 233.4 150 71.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 9.3e-59 230.7 150 72.0
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 9.3e-59 230.7 150 70.0
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.2e-58 230.3 150 78.0
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 3.5e-58 228.8 150 71.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 4.6e-58 228.4 150 71.3
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 8.7e-57 224.2 149 71.8
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 8.7e-57 224.2 149 71.8
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 4.3e-56 221.9 151 70.9
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 9.6e-56 220.7 168 63.7
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-55 220.3 151 69.5
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.8e-54 216.5 143 74.1
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.3e-52 210.3 150 67.3
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.4e-51 206.8 149 63.8
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.2e-51 205.7 117 84.6
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.2e-50 203.8 119 81.5
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.6e-50 201.8 153 66.7
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.0e-49 200.7 119 80.7
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.3e-49 199.5 153 57.5
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.1e-46 190.7 125 70.4
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.0e-45 186.4 108 77.8
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 6.5e-44 181.4 108 75.0
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.3e-41 173.7 149 52.3
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.5e-40 170.2 178 55.1
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.5e-37 160.2 95 83.2
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.4e-35 153.7 149 49.0
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 5.7e-32 141.7 121 62.0
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 9.7e-32 141.0 72 90.3
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.8e-31 139.4 75 88.0
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.8e-31 138.7 100 70.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 2.6e-29 132.9 144 46.5
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 2.2e-28 129.8 72 81.9
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.6e-26 123.6 75 77.3
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.6e-26 123.6 80 76.2
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.1e-26 123.2 89 73.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 3.6e-26 122.5 78 79.5
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-25 120.2 64 87.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.8e-25 120.2 64 87.5
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 3.0e-25 119.4 76 75.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.3e-20 104.0 152 36.8
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.9e-13 78.6 53 77.4
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 6.8e-09 65.1 49 65.3


User provided reference genes

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