Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.4e-75 285.4 145 100.0
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 5.4e-67 257.7 145 88.3
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.6e-66 256.1 146 89.7
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.6e-66 256.1 146 89.7
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 6.0e-66 254.2 145 86.9
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 7.8e-66 253.8 145 86.9
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.0e-65 251.9 145 87.6
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.0e-65 251.9 145 87.6
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 87.6
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 5.0e-65 251.1 145 86.2
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 1.1e-64 250.0 145 84.8
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 84.8
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 4.3e-64 248.1 145 85.5
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 7.3e-64 247.3 145 85.5
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 7.3e-64 247.3 145 86.9
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 7.3e-64 247.3 145 84.8
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.2e-63 246.5 145 85.5
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.2e-63 246.5 145 84.1
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 1.6e-63 246.1 145 83.4
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.6e-63 246.1 144 84.7
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 84.1
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 84.1
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 84.1
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 84.1
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 85.6
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 86.3
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 3.6e-63 245.0 146 85.6
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 86.2
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 4.7e-63 244.6 145 82.8
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 6.2e-63 244.2 145 83.4
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 6.2e-63 244.2 145 83.4
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 6.2e-63 244.2 145 84.1
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 84.1
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 1.1e-62 243.4 145 84.1
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.4e-62 243.0 145 84.8
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.8e-62 242.7 145 83.4
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 2.3e-62 242.3 145 82.8
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 80.7
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 83.4
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 83.4
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 82.1
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 84.9
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 83.4
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 5.2e-62 241.1 146 85.6
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 82.1
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 82.1
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 5.2e-62 241.1 146 84.2
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 8.9e-62 240.4 145 82.1
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 8.9e-62 240.4 145 81.4
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 8.9e-62 240.4 145 82.1
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 8.9e-62 240.4 144 82.6
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 8.9e-62 240.4 145 84.8
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.2e-61 240.0 145 82.1
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 84.2
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.5e-61 239.6 146 84.9
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 84.9
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 2.6e-61 238.8 145 82.8
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.6e-61 238.8 145 81.4
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 2.6e-61 238.8 145 82.8
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 3.4e-61 238.4 146 86.3
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 3.4e-61 238.4 145 82.8
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.4e-61 238.0 146 83.6
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 4.4e-61 238.0 146 84.2
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 4.4e-61 238.0 145 82.1
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 4.4e-61 238.0 145 82.1
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 5.8e-61 237.7 146 82.2
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 5.8e-61 237.7 146 82.2
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 5.8e-61 237.7 145 81.4
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 7.5e-61 237.3 145 81.4
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 7.5e-61 237.3 145 82.1
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 9.9e-61 236.9 145 80.7
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 9.9e-61 236.9 145 84.1
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 9.9e-61 236.9 145 84.1
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.7e-60 236.1 145 80.7
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 1.7e-60 236.1 145 83.4
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 82.9
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 82.9
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 2.2e-60 235.7 145 81.4
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 2.2e-60 235.7 145 81.4
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 2.9e-60 235.3 145 80.7
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 2.9e-60 235.3 148 83.1
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 82.9
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 3.7e-60 235.0 146 82.2
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 3.7e-60 235.0 145 80.0
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 3.7e-60 235.0 149 81.2
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 4.9e-60 234.6 145 82.1
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 6.4e-60 234.2 145 82.1
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 6.4e-60 234.2 145 82.1
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 6.4e-60 234.2 146 82.2
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 8.3e-60 233.8 145 81.4
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.1e-59 233.4 145 81.4
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.1e-59 233.4 147 80.3
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 80.8
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 1.9e-59 232.6 138 83.3
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 2.4e-59 232.3 145 81.4
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.8
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 81.5
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 81.5
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 80.8
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 4.1e-59 231.5 145 80.0
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 81.5
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.8
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 7.1e-59 230.7 145 80.0
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 80.8
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 80.8
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 1.6e-58 229.6 143 81.8
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 80.1
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 80.1
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 80.1
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 80.1
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 80.1
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.7e-58 228.8 147 83.0
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 80.1
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 78.8
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 80.8
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 82.2
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 6.0e-58 227.6 145 77.2
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 80.1
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 78.8
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.3e-57 226.5 148 81.1
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.1
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.8
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.8
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.8
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.8
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.8
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.8
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.8
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 6.6e-57 224.2 146 78.1
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 6.6e-57 224.2 146 78.8
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 2.5e-56 222.2 146 77.4
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 2.5e-56 222.2 146 78.1
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 2.5e-56 222.2 146 76.7
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 2.5e-56 222.2 137 82.5
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 3.3e-56 221.9 144 79.2
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 78.1
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 78.1
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 3.3e-56 221.9 136 80.1
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 4.3e-56 221.5 145 80.7
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 5.6e-56 221.1 145 77.2
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 3.6e-55 218.4 143 77.6
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 4.0e-54 214.9 139 78.4
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 4.0e-54 214.9 145 75.2
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 6.8e-54 214.2 146 77.4
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.2e-53 213.4 146 73.3
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 1.2e-53 213.4 147 74.8
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.4e-53 211.5 146 78.1
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 3.8e-52 208.4 145 74.5
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 8.4e-52 207.2 146 71.9
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.3e-49 199.9 145 72.4
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 1.7e-49 199.5 103 94.2
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.1e-47 192.6 103 89.3
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 2.1e-47 192.6 147 71.4
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 1.2e-45 186.8 102 88.2
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 2.3e-41 172.6 147 62.6
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 9.6e-40 167.2 136 70.6
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 4.0e-38 161.8 136 57.4
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 2.2e-36 156.0 136 55.1
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 3.2e-35 152.1 98 76.5
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 5.4e-35 151.4 85 85.9
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 1.5e-32 143.3 142 54.2
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 4.3e-32 141.7 150 55.3
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 1.8e-30 136.3 145 57.2
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 4.0e-30 135.2 145 56.6
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 1.2e-29 133.7 85 75.3
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 1.5e-29 133.3 85 76.5
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 9.9e-29 130.6 146 58.2
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 2.7e-26 122.5 73 80.8
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 2.8e-23 112.5 60 91.7
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 2.5e-16 89.4 74 63.5
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 5.7e-16 88.2 128 42.2
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 2.2e-15 86.3 74 58.1
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 1.2e-13 80.5 125 48.0
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 3.2e-11 72.4 108 38.0
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 2.1e-10 69.7 142 36.6
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 7.9e-10 67.8 33 90.9
TAR629G2234 Trochodendron aralioides HOM05D002207 ORTHO05D002250 9.1e-06 54.3 43 69.8


User provided reference genes

Program Settings