Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-190 669.1 331 100.0
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.8e-32 142.5 313 30.4
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-26 124.4 322 29.2
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 1.5e-24 117.9 297 28.3
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.5e-24 117.9 241 32.0
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-23 114.8 168 38.7
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-22 111.3 122 48.4
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.9e-22 110.9 264 29.2
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.4e-22 110.5 160 36.2
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 4.1e-22 109.8 174 39.7
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.1e-22 109.0 254 28.3
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.6e-21 106.3 179 34.6
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 6.0e-21 105.9 159 35.8
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.8e-21 105.5 179 35.2
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.7e-20 104.4 140 37.9
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.1e-20 102.8 131 38.2
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-19 100.9 351 23.9
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.5e-19 100.5 162 34.6
Rhsim02G0110700 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.3e-19 99.8 124 41.1
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.3e-19 99.0 424 22.4
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.6e-18 96.7 108 41.7
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.4e-17 94.7 195 33.3
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-16 91.3 170 32.4
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.6e-16 90.5 275 27.6
Rhsim07G0162700 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.8e-16 89.4 126 38.9
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 9.9e-16 88.6 159 33.3
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-15 88.2 130 36.9
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 2.2e-15 87.4 107 43.9
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 2.9e-15 87.0 315 23.5
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 4.9e-15 86.3 161 31.1
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.9e-15 86.3 115 42.6
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.9e-15 86.3 115 42.6
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 8.4e-15 85.5 103 41.7
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 1.1e-14 85.1 151 36.4
RhsimUnG0169300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.1e-14 85.1 128 39.1
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.4e-14 84.7 163 30.7
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.4e-14 82.8 234 29.1
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.2e-13 81.6 220 27.7
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.6e-13 81.3 257 30.0
Rhsim13G0061700 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.5e-13 80.1 136 36.0
Rhsim01G0199300 Rhododendron simsii HOM05D008183 ORTHO05D007254 6.0e-13 79.3 175 30.9
COL.COLO4_27602 Corchorus olitorius HOM05D013144 ORTHO05D009449 7.8e-13 79.0 243 23.9
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.0e-12 77.0 169 31.4
QL01p036379 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-12 76.6 148 30.4
RhsimUnG0247100 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.9e-12 76.6 128 35.9
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.1e-12 76.3 98 40.8
CSS0034752 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 5.1e-12 76.3 249 26.5
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 5.1e-12 76.3 235 26.4
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 1.1e-11 75.1 85 44.7
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 3.3e-11 73.6 107 36.4
Atru.chr2.2758 Acer truncatum HOM05D000003 ORTHO05D000167 4.3e-11 73.2 261 23.8
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.3e-11 73.2 98 39.8
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.3e-11 73.2 84 47.6
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.6e-11 72.8 109 36.7
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.3e-11 72.4 269 26.8
Rhsim12G0012200 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.3e-10 71.6 158 30.4
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.1e-10 70.9 95 38.9
Rhsim09G0146400 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.8e-10 70.5 123 34.1
Atru.chr7.658 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-10 69.7 247 26.7
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.8e-10 69.7 97 38.1
Prupe.2G060500 Prunus persica HOM05D000003 ORTHO05D000004 8.1e-10 68.9 144 30.6
COL.COLO4_04272 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.4e-09 68.2 130 30.0
Rhsim04G0211900 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-09 68.2 114 36.0
FvH4_6g11612 Fragaria vesca HOM05D000003 ORTHO05D000004 1.8e-09 67.8 149 28.2
Rhsim07G0171000 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-09 67.8 105 33.3
Rhsim09G0012500 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-09 67.8 124 30.6
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 5.3e-09 66.2 98 37.8
FvH4_5g27367 Fragaria vesca HOM05D000003 ORTHO05D000004 6.9e-09 65.9 248 24.6
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 6.9e-09 65.9 140 32.1
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 9.0e-09 65.5 124 32.3
FvH4_2g04611 Fragaria vesca HOM05D000003 ORTHO05D000004 1.2e-08 65.1 125 29.6
Rhsim10G0186800 Rhododendron simsii HOM05D000973 ORTHO05D000652 1.2e-08 65.1 89 40.4
QL11p030351 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-08 64.7 181 24.9
TAR648G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.5e-08 64.7 140 28.6
CANSAT64G1929 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-08 64.3 270 20.0
TWI32G0745 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.0e-08 64.3 99 33.3
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.6e-08 63.9 86 39.5
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-08 63.9 122 27.0
Atru.chr12.2026 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-08 63.5 292 22.9
COL.COLO4_36557 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.4e-08 63.5 159 28.9
FvH4_5g04240 Fragaria vesca HOM05D000003 ORTHO05D000004 3.4e-08 63.5 116 31.9
Rhsim12G0201300 Rhododendron simsii HOM05D002908 ORTHO05D009379 3.4e-08 63.5 84 44.0
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 5.8e-08 62.8 121 28.9
Prupe.7G008600 Prunus persica HOM05D000003 ORTHO05D000004 5.8e-08 62.8 125 28.8
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.8e-08 62.8 123 30.1
FvH4_3g32111 Fragaria vesca HOM05D000003 ORTHO05D000004 7.6e-08 62.4 124 26.6
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 7.6e-08 62.4 127 31.5
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-08 62.0 120 30.0
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-08 62.0 120 30.0
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.9e-08 62.0 122 31.1
FvH4_2g11841 Fragaria vesca HOM05D000003 ORTHO05D000004 9.9e-08 62.0 136 27.2
FvH4_6g32473 Fragaria vesca HOM05D000003 ORTHO05D010713 9.9e-08 62.0 236 24.6
Lj8P205T42 Lonicera japonica HOM05D008183 ORTHO05D007254 9.9e-08 62.0 96 34.4
QL05p054879 Quercus lobata HOM05D000003 ORTHO05D000126 9.9e-08 62.0 210 24.3
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.3e-07 61.6 99 33.3
FvH4_1g19471 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-07 61.6 126 30.2
TAR121G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.3e-07 61.6 108 32.4
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 1.7e-07 61.2 262 23.3
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 1.7e-07 61.2 96 33.3
Prupe.6G087800 Prunus persica HOM05D000003 ORTHO05D000004 1.7e-07 61.2 144 29.2
Atru.chr7.1974 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-07 60.8 122 30.3
BcaB01g01579 Brassica carinata HOM05D000003 ORTHO05D001498 2.2e-07 60.8 124 32.3
FvH4_1g29471 Fragaria vesca HOM05D000003 ORTHO05D000004 2.2e-07 60.8 100 36.0
FvH4_3g21491 Fragaria vesca HOM05D000003 ORTHO05D000004 2.2e-07 60.8 124 25.0
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 2.2e-07 60.8 115 32.2
Aa31LG9G5230 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-07 60.5 124 27.4
QL12p036057 Quercus lobata HOM05D001694 ORTHO05D000248 2.9e-07 60.5 131 24.4
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 2.9e-07 60.5 113 35.4
FvH4_1g10354 Fragaria vesca HOM05D000003 ORTHO05D022646 3.8e-07 60.1 258 24.8
Lj4g0016137 Lotus japonicus HOM05D000003 ORTHO05D000004 3.8e-07 60.1 121 31.4
Rhsim13G0172400 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.8e-07 60.1 61 47.5
Atru.chr12.2514 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-07 59.7 124 28.2
Atru.chr6.785 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-07 59.7 113 34.5
Aa31LG6G11540 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.9e-07 59.7 141 28.4
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 4.9e-07 59.7 115 31.3
TWI23G1168 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.9e-07 59.7 126 31.0
TAR162G0005 Trochodendron aralioides HOM05D000003 ORTHO05D000004 4.9e-07 59.7 124 29.8
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 4.9e-07 59.7 187 27.8
CSS0014976 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.4e-07 59.3 169 27.2
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 6.4e-07 59.3 128 30.5
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 6.4e-07 59.3 120 27.5
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-07 58.9 124 31.5
Atru.chr11.265 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-07 58.9 113 31.0
Atru.chr13.1582 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-07 58.9 114 29.8
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-07 58.9 116 31.9
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.4e-07 58.9 122 30.3
PSO339G1433 Papaver somniferum HOM05D000003 ORTHO05D000004 8.4e-07 58.9 235 25.1
RcHm_v2.0_Chr1g0323031 Rosa chinensis HOM05D011824 ORTHO05D017030 8.4e-07 58.9 126 31.0
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 58.5 122 29.5
Aa31csc275G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-06 58.5 126 27.8
Aa31sc248G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-06 58.5 129 27.1
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 58.5 120 29.2
CANSAT54G0106 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 58.5 136 29.4
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-06 58.2 124 29.8
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 1.4e-06 58.2 61 47.5
Aa31LG10G2340 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-06 58.2 143 25.9
COL.COLO4_14554 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.4e-06 58.2 93 31.2
Rhsim08G0124600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-06 58.2 123 28.5
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-06 58.2 63 41.3
Sopen02g028840 Solanum pennellii HOM05D007931 ORTHO05D010331 1.4e-06 58.2 48 56.2
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 57.8 122 25.4
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.9e-06 57.8 86 36.0
CANSAT54G1809 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-06 57.8 122 28.7
Atru.chr2.1763 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-06 57.4 100 36.0
CSS0033631 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 2.4e-06 57.4 51 51.0
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-06 57.4 130 26.2
COL.COLO4_35386 Corchorus olitorius HOM05D008133 ORTHO05D009449 2.4e-06 57.4 144 29.2
FvH4_3g26221 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-06 57.4 114 33.3
FvH4_5g18751 Fragaria vesca HOM05D000003 ORTHO05D017879 2.4e-06 57.4 189 23.8
Rhsim05G0208700 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.4e-06 57.4 123 26.8
vmacro01918 Vaccinium macrocarpon HOM05D008183 ORTHO05D007254 2.4e-06 57.4 69 43.5
BcaNung01080 Brassica carinata HOM05D000003 ORTHO05D001498 3.2e-06 57.0 223 26.0
CANSAT56G4406 Cannabis sativa HOM05D000003 ORTHO05D000004 3.2e-06 57.0 129 28.7
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 3.2e-06 57.0 97 33.0
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.2e-06 56.6 129 26.4
COL.COLO4_16660 Corchorus olitorius HOM05D008133 ORTHO05D007254 4.2e-06 56.6 94 31.9
COL.COLO4_22912 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.2e-06 56.6 116 27.6
Lj7C520T4 Lonicera japonica HOM05D000003 ORTHO05D000004 4.2e-06 56.6 70 34.3
Atru.chr11.1421 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-06 56.2 92 30.4
Atru.chr11.973 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-06 56.2 113 31.9
Atru.chr4.2367 Acer truncatum HOM05D000003 ORTHO05D000167 5.4e-06 56.2 195 21.0
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-06 56.2 122 27.0
Aa31LG2G16100 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.4e-06 56.2 83 34.9
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.4e-06 56.2 126 27.0
Aa31LG9G3130 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.4e-06 56.2 97 30.9
CANSAT64G1526 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-06 56.2 122 29.5
ClCG10G012420 Citrullus lanatus HOM05D000003 ORTHO05D000004 5.4e-06 56.2 115 30.4
Nitab4.5_0006377g0040 Nicotiana tabacum HOM05D000003 ORTHO05D000167 5.4e-06 56.2 66 37.9
Rhsim05G0209000 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.4e-06 56.2 123 28.5
Atru.chr12.1953 Acer truncatum HOM05D000003 ORTHO05D000004 7.1e-06 55.8 131 26.7
CANSAT21G1936 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-06 55.8 116 35.3
CANSAT78G0390 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-06 55.8 122 30.3
FvH4_2g05763 Fragaria vesca HOM05D000003 ORTHO05D000004 7.1e-06 55.8 126 25.4
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 7.1e-06 55.8 126 31.0
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 7.1e-06 55.8 68 45.6
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-06 55.5 121 28.9
Rhsim01G0076000 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.3e-06 55.5 123 27.6
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 9.3e-06 55.5 99 33.3
vmacro18900 Vaccinium macrocarpon HOM05D001973 ORTHO05D002095 9.3e-06 55.5 180 22.8


User provided reference genes

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