Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 1.6e-172 609.4 320 100.0
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 2.0e-159 565.8 320 94.7
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.4e-128 463.4 317 79.8
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 9.6e-125 450.7 323 76.8
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 4.8e-124 448.4 296 81.1
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 1.7e-121 439.9 318 77.4
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 2.4e-112 409.5 317 71.6
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.2e-112 409.1 289 77.9
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 3.7e-108 395.6 298 74.8
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 7.2e-96 354.8 323 61.9
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 1.6e-95 353.6 327 62.7
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 3.0e-94 349.4 275 69.1
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 3.9e-94 349.0 334 62.0
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 8.7e-94 347.8 334 62.6
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 3.3e-93 345.9 317 63.7
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 4.3e-93 345.5 317 59.6
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 9.7e-93 344.4 319 63.9
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 2.4e-91 339.7 318 61.9
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 2.4e-91 339.7 324 59.6
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 5.3e-91 338.6 331 61.3
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 6.9e-91 338.2 333 59.5
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 1.2e-90 337.4 319 62.1
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 4.5e-90 335.5 330 60.3
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 8.5e-89 331.3 324 60.5
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 6.1e-87 325.1 320 58.8
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 7.9e-87 324.7 323 59.1
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.4e-86 323.9 313 61.7
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 2.3e-86 323.2 355 57.7
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 8.8e-86 321.2 324 57.7
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 2.0e-85 320.1 326 59.2
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 2.0e-85 320.1 335 57.6
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 2.0e-85 320.1 314 61.1
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 2.6e-85 319.7 341 58.7
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 9.7e-85 317.8 320 59.7
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 1.3e-84 317.4 317 58.4
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.3e-84 317.4 308 60.7
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.3e-84 317.4 348 56.6
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 6.3e-84 315.1 324 57.4
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 6.3e-84 315.1 309 58.9
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 1.8e-83 313.5 336 56.8
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 9.1e-83 311.2 308 60.1
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.2e-82 310.8 332 56.3
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 2.6e-82 309.7 306 58.5
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 7.7e-82 308.1 321 59.2
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 1.0e-81 307.8 349 55.3
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 6.5e-81 305.1 301 59.1
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 7.2e-80 301.6 320 57.5
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 1.2e-79 300.8 337 56.4
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 1.6e-79 300.4 323 57.3
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 1.6e-79 300.4 346 52.6
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 2.7e-79 299.7 326 57.1
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 4.7e-79 298.9 277 61.0
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 4.7e-79 298.9 314 58.0
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 6.1e-79 298.5 342 53.8
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 7.9e-79 298.1 219 73.5
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 1.4e-78 297.4 324 54.3
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 1.4e-78 297.4 332 56.3
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 2.3e-78 296.6 323 55.7
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 3.9e-78 295.8 308 56.2
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 5.2e-78 295.4 338 55.6
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 7.4e-77 291.6 321 56.1
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 7.4e-77 291.6 315 55.2
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 3.7e-76 289.3 327 53.5
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 3.7e-76 289.3 321 57.0
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 6.3e-76 288.5 322 55.3
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 8.2e-76 288.1 292 58.6
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 1.8e-75 287.0 336 53.3
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 1.2e-74 284.3 352 52.6
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 1.2e-74 284.3 324 54.0
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.6e-74 283.9 325 56.0
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 2.6e-74 283.1 321 54.5
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 4.5e-74 282.3 390 49.5
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 2.2e-73 280.0 332 54.2
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.9e-73 279.6 324 54.9
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 3.8e-73 279.3 324 54.0
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 6.5e-73 278.5 320 53.1
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 3.2e-72 276.2 313 53.4
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 1.2e-71 274.2 335 52.8
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 1.2e-71 274.2 346 50.6
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 1.6e-71 273.9 347 51.6
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 1.6e-71 273.9 327 54.4
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.6e-71 272.7 292 56.5
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 3.6e-71 272.7 324 54.3
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 8.0e-71 271.6 340 51.2
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 8.0e-71 271.6 312 54.2
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 1.4e-70 270.8 340 51.2
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 1.8e-70 270.4 358 50.8
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.3e-70 270.0 273 57.9
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 6.7e-70 268.5 278 58.3
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 8.8e-70 268.1 324 53.7
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 2.0e-69 266.9 323 52.3
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 2.8e-68 263.1 318 50.6
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 2.4e-67 260.0 317 53.0
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 2.7e-66 256.5 379 47.2
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 4.5e-66 255.8 292 56.8
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 2.2e-65 253.4 495 39.2
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.9e-65 253.1 314 52.5
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 4.2e-64 249.2 308 52.3
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 5.5e-64 248.8 347 49.3
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.2e-63 247.7 317 52.1
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.6e-63 247.3 271 54.6
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 2.1e-63 246.9 317 50.2
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 8.0e-63 245.0 254 57.9
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 3.4e-61 239.6 171 73.7
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 4.4e-61 239.2 312 50.3
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.7e-60 237.3 302 52.0
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 2.2e-60 236.9 319 48.6
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 1.1e-59 234.6 290 52.1
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 1.1e-59 234.6 322 49.1
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 1.8e-59 233.8 352 45.7
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 2.4e-59 233.4 219 65.3
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 5.9e-58 228.8 246 56.5
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 6.5e-57 225.3 314 50.0
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 4.7e-55 219.2 260 55.0
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 3.5e-50 203.0 335 46.0
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 5.0e-49 199.1 321 44.9
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 1.0e-46 191.4 254 50.0
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 2.0e-45 187.2 200 54.5
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.3e-44 184.5 277 43.0
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 1.7e-44 184.1 210 53.8
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 4.1e-43 179.5 112 83.0
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 2.7e-42 176.8 279 45.5
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 1.0e-41 174.9 114 79.8
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 8.0e-39 165.2 175 58.9
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 4.4e-37 159.5 111 76.6
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 5.0e-33 146.0 225 46.7
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.1e-32 144.8 200 47.0
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 8.3e-28 128.6 114 64.0
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 7.8e-26 122.1 68 88.2
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 3.0e-25 120.2 103 60.2
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 2.4e-22 110.5 248 36.3
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 9.9e-21 105.1 321 32.7
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 2.1e-18 97.4 82 61.0
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 1.2e-15 88.2 87 52.9
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 2.1e-15 87.4 182 36.3
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 2.1e-15 87.4 182 36.3
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 5.2e-14 82.8 219 33.3
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 1.2e-13 81.6 209 33.5
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 3.0e-09 67.0 66 56.1
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 3.9e-09 66.6 50 66.0
unitig_749.g13565 Utricularia gibba HOM05D005155 ORTHO05D006266 2.5e-08 63.9 154 37.7
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 9.6e-08 62.0 159 34.0


User provided reference genes

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