Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 3.4e-147 525.0 271 100.0
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 2.6e-99 365.9 272 72.4
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.2e-96 357.1 265 73.6
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 8.2e-93 344.4 288 66.3
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 5.1e-87 325.1 272 66.9
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 3.1e-84 315.8 276 63.0
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.5e-78 297.0 272 62.1
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.4e-76 290.4 276 57.6
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.2e-75 287.3 268 60.1
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.0e-74 284.3 262 61.1
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 2.2e-74 283.1 268 59.7
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.9e-74 282.7 215 70.7
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.1e-73 280.8 268 60.4
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 4.2e-73 278.9 268 60.1
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.7e-72 276.2 270 57.0
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.4e-71 273.9 270 58.1
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 1.8e-71 273.5 262 58.0
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.8e-71 273.5 271 56.5
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 6.7e-71 271.6 259 60.2
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 8.8e-71 271.2 267 56.9
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 2.0e-70 270.0 262 59.9
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 2.6e-70 269.6 265 56.6
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 5.7e-70 268.5 253 58.9
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 7.5e-70 268.1 263 57.0
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.8e-69 266.2 262 56.5
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 4.8e-69 265.4 272 53.7
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 4.8e-69 265.4 271 55.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 6.3e-69 265.0 273 55.3
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 4.1e-68 262.3 263 55.5
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 9.1e-68 261.2 263 54.4
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 3.5e-67 259.2 263 54.8
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 5.9e-67 258.5 263 54.4
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 7.7e-67 258.1 281 53.0
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.3e-66 257.3 273 53.8
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.2e-66 256.5 272 55.9
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 2.9e-66 256.1 266 54.9
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 5.0e-66 255.4 267 55.4
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.5e-65 253.1 268 54.5
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 7.2e-65 251.5 267 55.1
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 9.4e-65 251.1 340 46.8
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 4.0e-63 245.7 268 51.9
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.2e-62 244.2 274 51.1
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.5e-62 243.8 271 52.8
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.0e-62 243.4 264 51.5
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 3.4e-62 242.7 269 50.9
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.1e-60 237.7 265 51.7
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.4e-60 237.3 251 51.4
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.1e-60 234.6 273 54.2
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 9.1e-60 234.6 260 51.9
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 2.0e-59 233.4 270 49.6
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.0e-58 231.1 275 53.1
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.3e-58 230.7 275 53.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.7e-58 230.3 275 53.1
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.7e-58 230.3 264 50.4
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 2.3e-58 229.9 270 53.7
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 3.8e-58 229.2 246 52.8
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 5.0e-58 228.8 263 47.9
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.5e-57 227.3 246 52.0
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 4.2e-57 225.7 273 49.5
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.6e-56 223.8 262 48.5
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.1e-56 223.4 277 52.3
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 2.1e-56 223.4 262 48.5
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 3.6e-56 222.6 267 49.1
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.8e-55 220.3 296 48.6
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 3.0e-55 219.5 259 51.4
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.0e-55 219.5 255 47.8
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 8.9e-55 218.0 267 49.8
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 2.0e-54 216.9 267 47.2
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.4e-54 216.1 257 49.4
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 5.7e-54 215.3 269 48.0
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 7.5e-54 214.9 199 63.3
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 2.8e-53 213.0 269 48.0
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 8.3e-53 211.5 269 45.4
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.1e-52 211.1 262 48.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.4e-52 210.7 261 48.3
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.8e-52 210.3 274 45.3
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.4e-52 209.9 291 48.8
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 5.4e-52 208.8 253 49.0
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 5.4e-52 208.8 262 47.3
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 5.4e-52 208.8 269 46.5
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 5.4e-52 208.8 212 56.6
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 9.2e-52 208.0 267 47.6
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.2e-51 207.6 274 47.1
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 3.5e-51 206.1 276 42.8
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 5.0e-50 202.2 256 48.8
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 6.6e-50 201.8 233 48.5
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 6.6e-50 201.8 276 45.3
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.9e-49 200.3 264 47.0
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 5.6e-49 198.7 258 41.9
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.2e-48 197.6 267 40.4
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.6e-48 197.2 267 42.3
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 6.8e-47 191.8 267 39.7
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 8.9e-47 191.4 267 39.7
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.5e-46 190.7 260 48.1
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.0e-46 190.3 268 43.3
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 2.6e-46 189.9 262 44.7
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 3.4e-46 189.5 258 41.5
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.8e-46 188.7 232 46.6
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.2e-45 186.8 210 49.0
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 2.9e-45 186.4 269 44.2
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 3.7e-45 186.0 261 45.2
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 1.1e-44 184.5 258 39.9
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 3.2e-44 183.0 193 52.3
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.1e-44 182.6 206 53.4
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 7.0e-44 181.8 267 39.7
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.6e-43 180.6 222 47.7
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.0e-43 180.3 258 40.3
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.0e-43 180.3 258 40.3
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 4.6e-43 179.1 258 39.9
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 3.9e-42 176.0 267 39.7
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 6.6e-42 175.3 259 39.8
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 8.6e-42 174.9 265 40.4
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 9.5e-41 171.4 259 40.9
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 6.2e-40 168.7 227 45.4
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.2e-40 168.7 238 43.7
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.1e-39 167.9 289 39.8
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.0e-38 163.7 279 41.9
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 2.6e-38 163.3 266 37.2
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.9e-33 147.1 267 39.0
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 3.3e-33 146.4 254 40.2
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 2.1e-32 143.7 270 38.1
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 8.1e-32 141.7 275 37.5
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 7.5e-30 135.2 261 38.3
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.7e-29 134.0 265 36.6
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 3.7e-29 132.9 272 34.2
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 4.1e-28 129.4 266 32.7
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 2.1e-27 127.1 93 68.8
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 2.3e-26 123.6 264 37.1
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.5e-25 120.2 261 33.3
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 6.0e-19 99.0 154 37.0
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.7e-18 97.4 256 33.2
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.0e-10 71.6 248 27.8
CAN.G142.9 Capsicum annuum HOM05D000388 ORTHO05D000473 1.5e-09 67.8 51 60.8
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 2.5e-09 67.0 152 31.6
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 3.3e-09 66.6 65 53.8
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 4.3e-09 66.2 80 47.5
CAN.G432.4 Capsicum annuum HOM05D002050 ORTHO05D001949 5.6e-09 65.9 51 58.8
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.1e-07 61.6 130 33.1


User provided reference genes

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