Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035505 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 1.3e-81 306.2 143 100.0
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 7.8e-34 147.5 95 73.7
Actinidia27253 Actinidia chinensis HOM05D005592 ORTHO05D006067 2.1e-31 139.4 89 74.2
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 1.4e-27 126.7 114 58.8
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 4.3e-24 115.2 96 59.4
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 2.1e-23 112.8 95 58.9
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 2.1e-23 112.8 95 58.9
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 7.5e-21 104.4 94 55.3
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 2.9e-20 102.4 95 52.6
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 4.1e-19 98.6 95 48.4
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 5.4e-19 98.2 95 48.4
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 5.4e-19 98.2 90 54.4
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 5.4e-19 98.2 94 48.9
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 7.0e-19 97.8 90 54.4
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 9.2e-19 97.4 95 51.6
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 1.2e-18 97.1 90 53.3
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 1.2e-18 97.1 91 51.6
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 1.2e-18 97.1 90 53.3
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 1.6e-18 96.7 90 53.3
GSVIVG01032876001 Vitis vinifera HOM05D005592 ORTHO05D006067 1.6e-18 96.7 90 56.7
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 2.7e-18 95.9 90 54.4
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 4.6e-18 95.1 90 53.3
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 6.0e-18 94.7 97 51.5
Cpa.g.sc41.43 Carica papaya HOM05D005592 ORTHO05D006067 2.3e-17 92.8 120 45.0
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 2.3e-17 92.8 90 53.3
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 2.3e-17 92.8 87 50.6
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 6.6e-17 91.3 90 53.3
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 6.6e-17 91.3 90 53.3
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 1.1e-16 90.5 102 47.1
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 1.5e-16 90.1 91 48.4
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 1.5e-16 90.1 94 48.9
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 1.9e-16 89.7 96 49.0
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 4.3e-16 88.6 123 40.7
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 4.3e-16 88.6 73 60.3
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 7.3e-16 87.8 88 54.5
Atru.chr12.227 Acer truncatum HOM05D005592 ORTHO05D006067 9.5e-16 87.4 88 48.9
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 2.1e-15 86.3 88 47.7
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 2.1e-15 86.3 120 38.3
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 2.1e-15 86.3 100 46.0
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 2.8e-15 85.9 95 49.5
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 4.7e-15 85.1 90 47.8
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 6.2e-15 84.7 94 41.5
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 6.2e-15 84.7 95 44.2
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 8.1e-15 84.3 95 44.2
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 1.1e-14 84.0 98 48.0
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 2.3e-14 82.8 88 51.1
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 3.1e-14 82.4 94 48.9
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 3.1e-14 82.4 108 46.3
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 4.0e-14 82.0 103 48.5
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 6.8e-14 81.3 70 57.1
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 6.8e-14 81.3 88 50.0
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 1.2e-13 80.5 86 44.2
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 1.5e-13 80.1 94 45.7
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 2.0e-13 79.7 94 45.7
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 2.6e-13 79.3 103 43.7
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 3.4e-13 79.0 88 47.7
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 4.4e-13 78.6 95 45.3
Haze_17388 Corylus avellana HOM05D005592 ORTHO05D006067 4.4e-13 78.6 87 50.6
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 5.8e-13 78.2 89 44.9
Thecc.10G188600 Theobroma cacao HOM05D005592 ORTHO05D006067 7.5e-13 77.8 89 44.9
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 7.5e-13 77.8 94 43.6
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 2.2e-12 76.3 70 51.4
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 3.7e-12 75.5 119 38.7
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 8.3e-12 74.3 66 54.5
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 1.4e-11 73.6 93 38.7
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 1.9e-11 73.2 79 50.6
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 3.2e-11 72.4 89 41.6
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 5.4e-11 71.6 87 43.7
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 4.6e-10 68.6 87 43.7
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 6.0e-10 68.2 87 43.7
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 7.8e-10 67.8 86 40.7
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 1.3e-09 67.0 95 46.3
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 5.1e-09 65.1 100 38.0
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 5.1e-09 65.1 115 33.0
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 8.6e-09 64.3 78 42.3
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 1.1e-08 63.9 78 42.3
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 1.5e-08 63.5 87 37.9
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 1.5e-08 63.5 87 36.8
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 1.9e-08 63.2 87 36.8
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 3.3e-08 62.4 87 36.8
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 5.6e-08 61.6 67 44.8
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 9.5e-08 60.8 65 44.6
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 2.8e-07 59.3 86 34.9
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 2.8e-07 59.3 87 35.6
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 1.4e-06 57.0 87 33.3
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 1.8e-06 56.6 86 33.7
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 1.8e-06 56.6 86 33.7
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 3.1e-06 55.8 77 41.6


User provided reference genes

Program Settings