Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 4.6e-206 721.1 387 100.0
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 3.3e-111 406.0 369 64.8
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.6e-110 403.7 370 64.3
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 9.6e-95 351.3 375 57.9
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 8.1e-78 295.0 375 53.3
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.4e-69 267.7 342 50.9
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 2.6e-60 236.9 325 48.6
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.4e-58 231.1 373 46.9
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.0e-51 208.4 152 77.0
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 1.0e-51 208.4 373 40.8
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 6.5e-51 205.7 389 40.1
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 8.5e-51 205.3 379 39.6
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 5.5e-50 202.6 368 40.8
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 8.8e-48 195.3 374 39.6
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.5e-47 194.5 372 41.7
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 9.1e-45 185.3 395 40.3
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.5e-44 184.5 378 40.2
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 2.6e-44 183.7 222 51.8
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.0e-43 181.8 380 40.3
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 2.9e-43 180.3 376 37.5
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 3.8e-43 179.9 376 38.0
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 3.8e-43 179.9 372 39.2
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 1.1e-42 178.3 375 38.4
Actinidia24231 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.9e-42 177.6 193 57.5
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 3.2e-42 176.8 370 38.1
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 7.2e-42 175.6 378 38.4
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 3.6e-41 173.3 371 37.5
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.3e-40 170.6 378 39.7
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 5.2e-40 169.5 378 36.8
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 9.7e-39 165.2 422 36.0
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 2.2e-38 164.1 304 40.8
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 6.3e-38 162.5 199 49.7
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 1.3e-35 154.8 372 33.9
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 1.5e-34 151.4 312 38.5
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 1.2e-33 148.3 307 38.1
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 8.0e-33 145.6 330 39.1
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 1.4e-32 144.8 375 33.1
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 1.4e-32 144.8 325 37.5
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 3.0e-32 143.7 371 35.8
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 5.2e-32 142.9 314 36.3
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 6.8e-32 142.5 308 35.1
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.2e-31 141.7 324 36.1
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.5e-31 141.4 307 37.1
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 4.4e-31 139.8 316 35.4
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 7.5e-31 139.0 319 37.3
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 1.3e-30 138.3 370 33.2
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 1.7e-30 137.9 307 35.8
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 1.7e-30 137.9 321 34.9
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 2.2e-30 137.5 373 34.6
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 1.1e-29 135.2 309 37.5
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.1e-29 135.2 104 69.2
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.8e-29 134.4 387 33.6
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 2.4e-29 134.0 304 38.2
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 3.1e-29 133.7 317 36.9
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 2.2e-27 127.5 378 32.0
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 2.9e-27 127.1 261 39.5
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 6.5e-27 125.9 304 36.2
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.1e-26 125.2 371 32.9
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 1.5e-26 124.8 304 34.5
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 1.9e-26 124.4 308 36.0
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 4.2e-26 123.2 281 37.7
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.6e-25 121.3 303 33.3
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 1.6e-25 121.3 378 31.0
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 2.7e-25 120.6 309 32.0
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.6e-25 120.2 302 33.4
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.4e-24 118.2 304 34.9
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 2.3e-24 117.5 321 34.9
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 1.5e-23 114.8 306 35.3
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 3.4e-23 113.6 371 29.4
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 7.5e-23 112.5 320 32.5
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 7.5e-23 112.5 305 35.4
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 9.8e-23 112.1 305 33.1
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 3.7e-22 110.2 313 33.9
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.1e-21 108.6 303 32.3
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 2.4e-21 107.5 370 30.3
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 7.0e-21 105.9 307 33.9
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 9.1e-21 105.5 170 44.7
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 5.0e-19 99.8 302 30.1
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.2e-17 95.1 306 32.4
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 2.8e-17 94.0 207 40.1
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 3.6e-17 93.6 373 29.8
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 4.7e-17 93.2 221 37.6
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 6.1e-17 92.8 304 31.9
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 1.0e-16 92.0 371 30.2
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 1.4e-16 91.7 307 32.6
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 3.0e-16 90.5 304 32.9
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 1.3e-14 85.1 245 30.6
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 8.3e-14 82.4 86 52.3
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 8.3e-14 82.4 86 52.3
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 8.3e-14 82.4 86 52.3
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 1.8e-13 81.3 147 39.5
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 3.2e-13 80.5 86 51.2
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 2.0e-12 77.8 89 48.3
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 3.5e-12 77.0 114 43.0
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 3.5e-12 77.0 307 30.6
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 6.6e-11 72.8 76 51.3
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 6.6e-11 72.8 76 51.3
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 8.6e-11 72.4 307 30.9
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 4.3e-10 70.1 374 25.9
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 9.5e-10 68.9 89 43.8
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 1.4e-08 65.1 77 46.8
PRCOL_00004573 Prasinoderma coloniale HOM05D007535 ORTHO05D008520 2.3e-08 64.3 195 28.2
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 8.9e-08 62.4 190 31.6
Nitab4.5_0001640g0010 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.4e-07 60.5 96 39.6
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 1.7e-06 58.2 42 66.7
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 4.9e-06 56.6 183 33.3


User provided reference genes

Program Settings