Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031081 Camellia sinensis var. sinensis HOM05D007335 ORTHO05D009113 9.1e-83 310.8 247 100.0
CSS0035448 Camellia sinensis var. sinensis HOM05D007335 ORTHO05D009113 9.1e-83 310.8 247 100.0
Rhsim08G0209400 Rhododendron simsii HOM05D007335 ORTHO05D009113 1.8e-70 270.0 247 91.9
vmacro19030 Vaccinium macrocarpon HOM05D000991 ORTHO05D000848 9.8e-69 264.2 245 91.8
Dinv38157 Davidia involucrata HOM05D007335 ORTHO05D009113 1.4e-67 260.4 247 89.9
Actinidia25436 Actinidia chinensis HOM05D007335 ORTHO05D009113 3.2e-67 259.2 247 89.9
Lj9P208T20 Lonicera japonica HOM05D007335 ORTHO05D009113 1.2e-66 257.3 245 84.5
Thecc.06G035600 Theobroma cacao HOM05D007335 ORTHO05D009113 6.2e-63 245.0 244 87.3
Peaxi162Scf00089g00163 Petunia axillaris HOM05D007335 ORTHO05D009113 4.0e-62 242.3 244 87.7
Sabra05G0118300 Salix brachista HOM05D007335 ORTHO05D009113 1.2e-61 240.7 239 88.7
CAN.G338.3 Capsicum annuum HOM05D007335 ORTHO05D009113 9.8e-61 237.7 240 88.3
Gohir.D10G078400 Gossypium hirsutum HOM05D007335 ORTHO05D009113 1.7e-60 236.9 241 86.7
PGSC0003DMG400018173 Solanum tuberosum HOM05D007335 ORTHO05D009113 2.9e-60 236.1 244 86.5
TAR636G3162 Trochodendron aralioides HOM05D007335 ORTHO05D009113 2.9e-60 236.1 245 85.7
Gorai.011G085200 Gossypium raimondii HOM05D007335 ORTHO05D009113 3.7e-60 235.7 241 86.3
Gohir.A10G072600 Gossypium hirsutum HOM05D007335 ORTHO05D009113 1.1e-59 234.2 241 86.3
DCAR_014323 Daucus carota HOM05D007335 ORTHO05D009113 3.2e-59 232.6 238 73.9
Solyc03g112560.4 Solanum lycopersicum HOM05D007335 ORTHO05D009113 3.2e-59 232.6 244 86.1
Sopen03g031620 Solanum pennellii HOM05D007335 ORTHO05D009113 3.2e-59 232.6 244 86.1
Ciclev10026924m.g Citrus clementina HOM05D007335 ORTHO05D009113 5.4e-59 231.9 242 84.3
Migut.I00730 Erythranthe guttata HOM05D007335 ORTHO05D009113 5.4e-59 231.9 237 86.5
FvH4_4g04420 Fragaria vesca HOM05D007335 ORTHO05D009113 1.6e-58 230.3 247 83.4
FAN12G1318 Fragaria x ananassa HOM05D007335 ORTHO05D009113 1.6e-58 230.3 247 83.4
Nitab4.5_0011992g0010 Nicotiana tabacum HOM05D007335 ORTHO05D009113 1.6e-58 230.3 240 86.2
MSTRG.22785 Avicennia marina HOM05D007335 ORTHO05D009113 2.1e-58 229.9 247 84.6
Potri.005G147200 Populus trichocarpa HOM05D007335 ORTHO05D009113 3.5e-58 229.2 236 75.8
Nn5g27696 Nelumbo nucifera HOM05D007335 ORTHO05D009113 4.6e-58 228.8 244 84.0
MELO3C023450.2 Cucumis melo HOM05D007335 ORTHO05D009113 7.8e-58 228.0 242 84.7
CANSAT11G1934 Cannabis sativa HOM05D007335 ORTHO05D009113 1.7e-57 226.9 245 82.9
Aqoxy7G03553 Aquilegia oxysepala HOM05D007335 ORTHO05D009113 2.3e-57 226.5 245 83.3
CsaV3_7G032070 Cucumis sativus L. HOM05D007335 ORTHO05D009113 2.3e-57 226.5 242 84.3
ClCG09G003150 Citrullus lanatus HOM05D000991 ORTHO05D009113 3.0e-57 226.1 242 84.7
Duzib192G1057 Durio zibethinus HOM05D007335 ORTHO05D009113 3.9e-57 225.7 234 88.0
Prupe.1G046400 Prunus persica HOM05D007335 ORTHO05D009113 5.1e-57 225.3 247 83.8
COL.COLO4_11833 Corchorus olitorius HOM05D007335 ORTHO05D009113 6.6e-57 224.9 242 85.5
RcHm_v2.0_Chr4g0394981 Rosa chinensis HOM05D007335 ORTHO05D009113 8.6e-57 224.6 238 84.9
CiPaw.01G251400 Carya illinoinensis HOM05D007335 ORTHO05D009113 1.1e-56 224.2 245 84.9
Sed0020676 Sechium edule HOM05D007335 ORTHO05D009113 1.5e-56 223.8 242 83.9
Atru.chr1.3042 Acer truncatum HOM05D007335 ORTHO05D009113 1.9e-56 223.4 247 69.2
Eucgr.F03934 Eucalyptus grandis HOM05D007335 ORTHO05D009113 1.9e-56 223.4 241 84.2
Atru.chr1.3077 Acer truncatum HOM05D007335 ORTHO05D009113 7.3e-56 221.5 247 67.6
Cpa.g.sc10.128 Carica papaya HOM05D007335 ORTHO05D009113 1.2e-55 220.7 243 84.0
Phvul.005G182300 Phaseolus vulgaris HOM05D007335 ORTHO05D009113 2.1e-55 219.9 245 81.6
arahy.Tifrunner.gnm1.ann1.VC89AA Arachis hypogaea HOM05D007335 ORTHO05D009113 3.6e-55 219.2 243 71.2
Cfa001918 Carpinus fangiana HOM05D007335 ORTHO05D009113 3.6e-55 219.2 240 85.4
QL05p033457 Quercus lobata HOM05D007335 ORTHO05D009113 3.6e-55 219.2 245 84.9
Manes.11G062700 Manihot esculenta HOM05D007335 ORTHO05D009113 4.7e-55 218.8 231 73.6
Oeu056082.1 Olea europaea HOM05D007335 ORTHO05D009113 2.3e-54 216.5 247 83.0
Ah.09g230250 Amaranthus hybridus HOM05D007335 ORTHO05D009113 3.1e-54 216.1 240 83.8
VMungo0720G1143 Vigna mungo HOM05D007335 ORTHO05D009113 4.0e-54 215.7 245 80.0
AUR62033264 Chenopodium quinoa HOM05D007335 ORTHO05D009113 5.2e-54 215.3 245 75.9
Hma1.2p1_1624F.1_g294260 Hydrangea macrophylla HOM05D007335 ORTHO05D009113 6.8e-54 214.9 237 84.8
Lsat_1_v5_gn_7_8840 Lactuca sativa HOM05D007335 ORTHO05D009113 1.5e-53 213.8 247 70.9
SalBow7G0717 Salvia bowleyana HOM05D007335 ORTHO05D009113 1.5e-53 213.8 243 82.3
Lsat_1_v5_gn_7_9201 Lactuca sativa HOM05D007335 ORTHO05D009113 2.6e-53 213.0 247 70.9
HanXRQChr04g0123161 Helianthus annuus HOM05D007335 ORTHO05D009113 5.8e-53 211.8 235 66.8
TWI75G1014 Tripterygium wilfordii HOM05D007335 ORTHO05D009113 9.9e-53 211.1 238 81.9
ECA236G2118 Erigeron canadensis HOM05D007335 ORTHO05D009113 2.9e-52 209.5 247 82.2
Sc18g0001670 Simmondsia chinensis HOM05D007335 ORTHO05D009113 3.7e-52 209.1 245 80.8
Medtr2g104640 Medicago truncatula HOM05D007335 ORTHO05D009113 4.9e-52 208.8 243 80.7
SHI11271 Sapria himalayana HOM05D007335 ORTHO05D009113 1.9e-51 206.8 238 79.8
Glyma.11G078800 Glycine max HOM05D007335 ORTHO05D009113 4.1e-51 205.7 239 68.2
Glyma.13G367800 Glycine max HOM05D007335 ORTHO05D009113 4.1e-51 205.7 239 68.2
Lj3g0012247 Lotus japonicus HOM05D007335 ORTHO05D009113 2.1e-50 203.4 245 78.8
Psat5g304120 Pisum sativum HOM05D007335 ORTHO05D009113 4.6e-50 202.2 241 79.7
Lalb_Chr22g0350751 Lupinus albus HOM05D007335 ORTHO05D009113 6.0e-50 201.8 245 45.3
EL10Ac8g18335 Beta vulgaris HOM05D007335 ORTHO05D009113 1.3e-49 200.7 244 77.5
Ca_01038_v3 Cicer arietinum L. HOM05D007335 ORTHO05D009113 1.3e-49 200.7 238 80.3
Zm00001eb068720 Zea mays HOM05D007335 ORTHO05D009113 3.9e-49 199.1 248 77.4
TPR.G12600 Trifolium pratense HOM05D002633 ORTHO05D009113 5.1e-49 198.7 245 78.8
Ca_01037_v3 Cicer arietinum L. HOM05D007335 ORTHO05D009113 5.6e-48 195.3 241 78.8
Os04g0643700 Oryza sativa ssp. japonica HOM05D007335 ORTHO05D009113 7.3e-48 194.9 248 76.6
Sp5g35240 Schrenkiella parvula HOM05D007335 ORTHO05D009113 1.2e-47 194.1 234 66.7
CARHR074070 Cardamine hirsuta HOM05D007335 ORTHO05D009113 1.6e-47 193.7 234 66.7
Thhalv10018541m.g Eutrema salsugineum HOM05D007335 ORTHO05D009113 3.6e-47 192.6 234 67.1
THA.LOC104808192 Tarenaya hassleriana HOM05D007335 ORTHO05D009113 3.6e-47 192.6 234 67.5
AL2G40920 Arabidopsis lyrata HOM05D007335 ORTHO05D009113 1.1e-46 191.0 237 64.6
BolC6t40409H Brassica oleracea HOM05D007335 ORTHO05D009113 1.1e-46 191.0 234 66.2
SGA_v2.0_scaffold5G02742 Striga asiatica HOM05D007335 ORTHO05D009113 1.4e-46 190.7 242 79.3
Carub.0002s2701 Capsella rubella HOM05D007335 ORTHO05D009113 1.8e-46 190.3 234 76.9
Aa31sc12G100 Aethionema arabicum HOM05D007335 ORTHO05D009113 3.1e-46 189.5 237 76.8
AT1G80550 Arabidopsis thaliana HOM05D007335 ORTHO05D009113 4.0e-46 189.1 237 77.6
BraA07t32015Z Brassica rapa HOM05D007335 ORTHO05D009113 8.9e-46 188.0 234 65.4
A07p45120 Brassica napus HOM05D007335 ORTHO05D009113 1.5e-45 187.2 234 65.0
QL11p027335 Quercus lobata HOM05D007335 ORTHO05D009113 1.3e-44 184.1 225 48.4
C06p53950 Brassica napus HOM05D007335 ORTHO05D009113 6.4e-44 181.8 234 65.0
FAN17G0442 Fragaria x ananassa HOM05D007335 ORTHO05D009113 8.7e-41 171.4 110 72.7
HPP92_015277 Vanilla planifolia HOM05D007335 ORTHO05D009113 2.5e-40 169.9 216 69.9
Actinidia24285 Actinidia chinensis HOM05D007335 ORTHO05D009113 6.2e-39 165.2 195 48.2
Cc04_g04780 Coffea canephora HOM05D007335 ORTHO05D009113 4.0e-38 162.5 234 65.8
Nitab4.5_0019152g0010 Nicotiana tabacum HOM05D007335 ORTHO05D009113 4.9e-36 155.6 96 80.2
Lsat_1_v5_gn_7_8860 Lactuca sativa HOM05D007335 ORTHO05D009113 5.1e-33 145.6 227 50.2
PGR102G0018 Punica granatum HOM05D007335 ORTHO05D009113 6.9e-30 135.2 179 89.4
TAR636G3581 Trochodendron aralioides HOM05D007335 ORTHO05D009113 1.8e-25 120.6 66 86.4
GSVIVG01027384001 Vitis vinifera HOM05D007335 ORTHO05D009113 5.6e-24 115.5 224 58.0
GSVIVG01027388001 Vitis vinifera HOM05D007335 ORTHO05D009113 9.6e-24 114.8 65 83.1
Actinidia28541 Actinidia chinensis HOM05D007335 ORTHO05D009113 1.4e-22 110.9 78 69.2
Actinidia18226 Actinidia chinensis HOM05D001077 ORTHO05D009113 2.7e-18 96.7 58 77.6
Ca_01034_v3 Cicer arietinum L. HOM05D007335 ORTHO05D009113 2.7e-18 96.7 186 32.8
vmacro06415 Vaccinium macrocarpon HOM05D007335 ORTHO05D009113 5.1e-17 92.4 246 29.3
ATR0767G117 Amborella trichopoda HOM05D007335 ORTHO05D009113 1.4e-14 84.3 244 60.2
SEGI_12422 Sequoiadendron giganteum HOM05D000424 ORTHO05D009113 5.3e-14 82.4 96 41.7
ECA236G1506 Erigeron canadensis HOM05D000424 ORTHO05D000355 5.9e-13 79.0 104 34.6
Ciclev10019425m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.0e-12 78.2 91 40.7
HanXRQChr03g0070621 Helianthus annuus HOM05D000424 ORTHO05D000355 3.8e-12 76.3 104 36.5
Dinv20202 Davidia involucrata HOM05D000424 ORTHO05D000355 6.5e-12 75.5 121 34.7
Atru.chr2.1259 Acer truncatum HOM05D000424 ORTHO05D000355 8.4e-12 75.1 89 43.8
Lsat_1_v5_gn_6_38241 Lactuca sativa HOM05D000424 ORTHO05D000355 8.4e-12 75.1 91 42.9
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 1.4e-11 74.3 96 40.6
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 1.4e-11 74.3 96 40.6
Glyma.16G043600 Glycine max HOM05D000424 ORTHO05D000355 1.9e-11 73.9 99 38.4
Lj1P839T30 Lonicera japonica HOM05D000424 ORTHO05D000355 1.9e-11 73.9 104 33.7
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 2.5e-11 73.6 96 39.6
Medtr7g085100 Medicago truncatula HOM05D000424 ORTHO05D000355 3.2e-11 73.2 99 39.4
Nitab4.5_0001911g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 3.2e-11 73.2 96 38.5
CAN.G2.3 Capsicum annuum HOM05D000424 ORTHO05D000355 5.5e-11 72.4 96 38.5
ECA233G4382 Erigeron canadensis HOM05D000424 ORTHO05D000355 5.5e-11 72.4 91 40.7
PGSC0003DMG400011668 Solanum tuberosum HOM05D000424 ORTHO05D000355 5.5e-11 72.4 96 39.6
Zm00001eb369070 Zea mays HOM05D007168 ORTHO05D000355 7.2e-11 72.0 91 40.7
Cpa.g.sc676.3 Carica papaya HOM05D000424 ORTHO05D000355 9.3e-11 71.6 96 38.5
Os01g0816000 Oryza sativa ssp. japonica HOM05D007168 ORTHO05D000355 1.2e-10 71.2 93 39.8
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.1e-10 70.5 97 33.0
Oeu014921.1 Olea europaea HOM05D000424 ORTHO05D000355 2.1e-10 70.5 99 39.4
Eucgr.F01165 Eucalyptus grandis HOM05D000424 ORTHO05D000355 2.7e-10 70.1 96 34.4
CSS0043028 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 3.5e-10 69.7 99 37.4
Sopen07g013080 Solanum pennellii HOM05D000424 ORTHO05D000355 3.5e-10 69.7 96 38.5
BraA02t05256Z Brassica rapa HOM05D000424 ORTHO05D000355 1.3e-09 67.8 96 37.5
CSS0017032 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.3e-09 67.8 94 37.2
CSS0037313 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 3.9e-09 66.2 94 36.2
SGA_v2.0_scaffold33G13397 Striga asiatica HOM05D000424 ORTHO05D000355 3.9e-09 66.2 113 36.3
Carub.0003s1485 Capsella rubella HOM05D000424 ORTHO05D000355 5.1e-09 65.9 96 32.3
AT3G15200 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 8.7e-09 65.1 98 30.6
Thhalv10022416m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 8.7e-09 65.1 98 28.6
Sp3g13410 Schrenkiella parvula HOM05D000424 ORTHO05D000355 8.7e-09 65.1 104 29.8
Sopen05g013400 Solanum pennellii HOM05D000424 ORTHO05D000355 8.7e-09 65.1 88 39.8
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.1e-08 64.7 91 38.5
CARHR090190 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.9e-08 63.9 96 30.2
HanXRQChr16g0500321 Helianthus annuus HOM05D000424 ORTHO05D000355 1.9e-08 63.9 91 36.3
Cpa.g.sc131.84 Carica papaya HOM05D000424 ORTHO05D000355 2.5e-08 63.5 95 32.6
Aa31LG8G2400 Aethionema arabicum HOM05D000424 ORTHO05D000355 3.3e-08 63.2 98 31.6
Sabra11G0101200 Salix brachista HOM05D000424 ORTHO05D000355 3.3e-08 63.2 97 33.0
VMungo1080G0876 Vigna mungo HOM05D000424 ORTHO05D000355 3.3e-08 63.2 96 32.3
Lalb_Chr14g0364331 Lupinus albus HOM05D000424 ORTHO05D000355 4.3e-08 62.8 96 35.4
Potri.011G115500 Populus trichocarpa HOM05D000424 ORTHO05D000355 5.7e-08 62.4 97 33.0
Os01g0151900 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 7.4e-08 62.0 99 28.3
SHI40067 Sapria himalayana HOM05D000424 ORTHO05D002854 1.3e-07 61.2 85 35.3
SHI40097 Sapria himalayana HOM05D000424 ORTHO05D002854 1.3e-07 61.2 85 35.3
Zm00001eb335990 Zea mays HOM05D000424 ORTHO05D000355 1.3e-07 61.2 99 25.3
CBR_g39232 Chara braunii HOM05D007335 ORTHO05D009113 1.6e-07 60.8 77 41.6
vmacro16405 Vaccinium macrocarpon HOM05D000131 ORTHO05D000086 2.8e-07 60.1 88 31.8
MBI15_g18239_MAGBIO Magnolia biondii HOM05D007168 ORTHO05D009495 4.8e-07 59.3 89 31.5
Lsat_1_v5_gn_7_104501 Lactuca sativa HOM05D000424 ORTHO05D000355 6.3e-07 58.9 120 26.7
MBI13_g05942_MAGBIO Magnolia biondii HOM05D007335 ORTHO05D009113 8.2e-07 58.5 65 41.5
Zm00001eb176370 Zea mays HOM05D007168 ORTHO05D009495 8.2e-07 58.5 86 36.0
Oeu045125.1 Olea europaea HOM05D007335 ORTHO05D009113 1.4e-06 57.8 74 47.3
CsaV3_7G032100 Cucumis sativus L. HOM05D007335 ORTHO05D009113 3.1e-06 56.6 33 72.7
SGA_v2.0_scaffold73G24233 Striga asiatica HOM05D000424 ORTHO05D000355 3.1e-06 56.6 97 30.9
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 4.1e-06 56.2 92 33.7
ATR0580G197 Amborella trichopoda HOM05D007168 ORTHO05D009495 5.3e-06 55.8 97 34.0
AT5G15010 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 5.3e-06 55.8 96 31.2
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.3e-06 55.8 92 32.6
Os08g0272200 Oryza sativa ssp. japonica HOM05D007168 ORTHO05D009495 6.9e-06 55.5 91 27.5
SEGI_21349 Sequoiadendron giganteum HOM05D007168 ORTHO05D009495 6.9e-06 55.5 90 33.3
TPR.G5879 Trifolium pratense HOM05D000424 ORTHO05D000355 6.9e-06 55.5 99 32.3
CDE09G0424 Ceratophyllum demersum HOM05D000069 ORTHO05D000355 9.0e-06 55.1 81 37.0
SHI14729 Sapria himalayana HOM05D000424 ORTHO05D000355 9.0e-06 55.1 79 34.2
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 9.0e-06 55.1 61 37.7


User provided reference genes

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