Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035441 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.0e-96 356.7 176 100.0
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 1.6e-73 279.6 175 81.1
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 8.8e-72 273.9 174 80.5
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 2.0e-71 272.7 174 80.5
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 7.5e-71 270.8 173 78.6
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 3.1e-69 265.4 174 79.3
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 6.5e-67 257.7 168 77.4
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 4.2e-66 255.0 178 71.9
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 5.5e-66 254.6 177 73.4
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 1.6e-65 253.1 178 73.6
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 4.7e-65 251.5 178 73.0
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 8.0e-65 250.8 178 73.0
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 3.0e-64 248.8 174 69.5
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 5.2e-64 248.1 173 70.5
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 2.0e-63 246.1 183 67.2
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 7.5e-63 244.2 173 69.9
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 3.7e-62 241.9 175 72.0
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 4.9e-62 241.5 175 69.7
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 1.4e-61 240.0 161 72.7
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 1.2e-60 236.9 184 65.8
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 1.2e-60 236.9 184 65.8
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 3.5e-60 235.3 157 71.3
CAN.G143.55 Capsicum annuum HOM05D005886 ORTHO05D007512 6.6e-59 231.1 170 70.6
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 6.6e-59 231.1 166 68.7
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 6.6e-59 231.1 181 68.0
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 1.5e-58 229.9 173 67.6
Lj3A921T39 Lonicera japonica HOM05D005886 ORTHO05D007512 1.9e-58 229.6 165 69.1
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 1.9e-58 229.6 179 65.4
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 2.5e-58 229.2 204 59.8
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 5.6e-58 228.0 175 64.0
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 9.5e-58 227.3 176 64.2
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 1.2e-57 226.9 177 65.0
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 2.1e-57 226.1 177 63.8
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 2.1e-57 226.1 175 64.6
Gohir.A03G069600 Gossypium hirsutum HOM05D005886 ORTHO05D007512 2.1e-57 226.1 176 66.5
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 3.6e-57 225.3 180 65.6
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 3.6e-57 225.3 181 65.7
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 6.1e-57 224.6 189 62.4
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 1.0e-56 223.8 192 59.9
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 1.8e-56 223.0 177 64.4
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 2.3e-56 222.6 173 63.0
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 2.3e-56 222.6 186 64.0
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 3.0e-56 222.2 157 68.8
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 5.2e-56 221.5 179 59.8
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 8.9e-56 220.7 177 62.1
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 2.6e-55 219.2 179 60.3
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 3.4e-55 218.8 173 65.3
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 3.4e-55 218.8 184 61.4
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 4.4e-55 218.4 173 65.3
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 5.7e-55 218.0 172 64.5
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 5.7e-55 218.0 176 61.4
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 1.7e-54 216.5 172 64.0
Sabra10G0191000 Salix brachista HOM05D005886 ORTHO05D007512 2.2e-54 216.1 179 60.3
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 2.9e-54 215.7 173 62.4
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 3.7e-54 215.3 179 60.9
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 6.4e-54 214.5 179 58.7
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 8.3e-54 214.2 187 60.4
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 1.4e-53 213.4 173 61.3
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 1.8e-53 213.0 184 60.3
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 3.2e-53 212.2 174 62.1
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 4.1e-53 211.8 173 61.8
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 5.4e-53 211.5 173 64.2
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 7.0e-53 211.1 172 61.6
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 9.2e-53 210.7 170 63.5
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 9.2e-53 210.7 172 61.0
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 1.2e-52 210.3 170 64.7
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 3.5e-52 208.8 177 62.7
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 5.9e-52 208.0 183 60.7
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 5.9e-52 208.0 183 60.7
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 5.9e-52 208.0 170 62.9
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 1.7e-51 206.5 173 63.0
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 1.7e-51 206.5 179 58.1
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.3e-51 206.1 175 62.3
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 3.0e-51 205.7 181 59.1
Peaxi162Scf00120g00720 Petunia axillaris HOM05D005886 ORTHO05D007512 6.6e-51 204.5 178 63.5
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 8.6e-51 204.1 147 68.0
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 8.6e-51 204.1 147 68.0
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 1.1e-50 203.8 173 60.1
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 1.5e-50 203.4 172 58.7
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 1.9e-50 203.0 147 67.3
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 1.9e-50 203.0 176 60.8
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 2.5e-50 202.6 147 67.3
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 2.5e-50 202.6 181 59.7
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 4.3e-50 201.8 177 61.6
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 4.3e-50 201.8 147 67.3
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 4.3e-50 201.8 172 58.7
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 7.3e-50 201.1 177 61.0
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 1.6e-49 199.9 176 59.7
Nitab4.5_0001781g0100 Nicotiana tabacum HOM05D005886 ORTHO05D007512 2.1e-49 199.5 124 75.8
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 2.8e-49 199.1 188 58.5
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 2.8e-49 199.1 188 58.5
arahy.Tifrunner.gnm1.ann1.V9EI6C Arachis hypogaea HOM05D005886 ORTHO05D007512 2.8e-49 199.1 189 58.2
arahy.Tifrunner.gnm1.ann1.WENH69 Arachis hypogaea HOM05D005886 ORTHO05D007512 2.8e-49 199.1 187 58.8
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 3.6e-49 198.7 154 61.7
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 3.6e-49 198.7 145 68.3
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 1.1e-48 197.2 140 67.9
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 1.4e-48 196.8 166 59.6
Ca_06327_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 8.9e-48 194.1 164 60.4
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 3.4e-47 192.2 180 55.6
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 5.8e-47 191.4 180 55.6
Sabra08G0009500 Salix brachista HOM05D005886 ORTHO05D007512 4.9e-46 188.3 170 55.9
vmacro07275 Vaccinium macrocarpon HOM05D005886 ORTHO05D007512 6.4e-46 188.0 118 78.0
BcaB05g22897 Brassica carinata HOM05D005886 ORTHO05D007512 9.2e-45 184.1 131 68.7
CSS0009115 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 3.3e-42 175.6 83 98.8
Os01g0771100 Oryza sativa ssp. japonica HOM05D005886 ORTHO05D007512 2.1e-41 172.9 161 57.8
CARHR240580 Cardamine hirsuta HOM05D005886 ORTHO05D007512 2.4e-37 159.5 118 65.3
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 5.4e-37 158.3 159 49.1
Dinv04428 Davidia involucrata HOM05D005886 ORTHO05D007512 2.1e-36 156.4 93 80.6
Zm00001eb151940 Zea mays HOM05D005886 ORTHO05D007512 3.5e-36 155.6 156 55.8
Oeu025604.1 Olea europaea HOM05D005886 ORTHO05D007512 1.3e-35 153.7 85 84.7
PSO339G0105 Papaver somniferum HOM05D005886 ORTHO05D007512 3.6e-33 145.6 176 47.7
SHI21255 Sapria himalayana HOM05D005886 ORTHO05D007512 2.6e-31 139.4 123 57.7
Psat6g052440 Pisum sativum HOM05D005886 ORTHO05D007512 1.1e-26 124.0 95 64.2
PSO384G2277 Papaver somniferum HOM05D005886 ORTHO05D007512 1.9e-26 123.2 176 42.0
Nn7g36032 Nelumbo nucifera HOM05D005886 ORTHO05D007512 1.2e-23 114.0 76 69.7
unitig_46.g18648 Utricularia gibba HOM05D005886 ORTHO05D007512 2.6e-23 112.8 83 60.2
SEGI_05706 Sequoiadendron giganteum HOM05D005886 ORTHO05D007512 5.8e-23 111.7 127 45.7
HanXRQChr07g0186821 Helianthus annuus HOM05D005886 ORTHO05D007512 2.9e-22 109.4 114 53.5
AUR62011207 Chenopodium quinoa HOM05D005886 ORTHO05D007512 2.4e-21 106.3 87 63.2
C03p87240 Brassica napus HOM05D005886 ORTHO05D007512 2.1e-17 93.2 67 68.7
BolC3t21025H Brassica oleracea HOM05D005886 ORTHO05D007512 2.1e-17 93.2 67 68.7
AUR62013280 Chenopodium quinoa HOM05D005886 ORTHO05D007512 8.1e-17 91.3 74 63.5
GSVIVG01034602001 Vitis vinifera HOM05D005886 ORTHO05D007512 2.4e-13 79.7 69 63.8
BraA01t00524Z Brassica rapa HOM05D005886 ORTHO05D007512 3.9e-11 72.4 89 51.7
VMungo0251G2551 Vigna mungo HOM05D005886 ORTHO05D007512 6.9e-08 61.6 92 39.1
Nn2g14223 Nelumbo nucifera HOM05D005886 ORTHO05D007512 1.2e-07 60.8 65 52.3
SGA_v2.0_scaffold5G02758 Striga asiatica HOM05D001009 ORTHO05D000829 5.8e-07 58.5 148 27.0
ClCG05G000570 Citrullus lanatus HOM05D005886 ORTHO05D007512 8.4e-06 54.7 108 37.0
Lj5g0014910 Lotus japonicus HOM05D000049 ORTHO05D000027 8.4e-06 54.7 49 51.0


User provided reference genes

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