Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 5.2e-53 210.7 99 100.0
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.2e-38 162.9 77 98.7
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.2e-38 162.9 77 98.7
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 5.2e-37 157.5 84 91.7
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 6.4e-27 124.0 83 73.5
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 8.3e-27 123.6 82 70.7
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 1.4e-26 122.9 84 71.4
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 4.3e-23 111.3 87 63.2
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.2e-22 109.8 84 65.5
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 1.1e-21 106.7 82 67.1
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 1.1e-21 106.7 82 67.1
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 3.1e-21 105.1 87 62.1
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 1.2e-20 103.2 87 62.1
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.2e-20 103.2 87 62.1
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 1.5e-20 102.8 102 54.9
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 1.5e-20 102.8 62 80.6
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 3.4e-20 101.7 65 73.8
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 4.4e-20 101.3 91 61.5
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 5.8e-20 100.9 62 79.0
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 7.5e-20 100.5 82 62.2
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.7e-19 99.4 60 80.0
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 1.7e-19 99.4 87 58.6
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 2.2e-19 99.0 79 62.0
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 3.7e-19 98.2 66 75.8
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 4.9e-19 97.8 60 78.3
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 8.3e-19 97.1 79 60.8
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 1.4e-18 96.3 80 60.0
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 2.4e-18 95.5 84 60.7
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 2.4e-18 95.5 80 62.5
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 2.4e-18 95.5 59 71.2
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 3.2e-18 95.1 61 73.8
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 4.1e-18 94.7 62 72.6
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 7.0e-18 94.0 64 70.3
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 7.0e-18 94.0 64 70.3
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 9.2e-18 93.6 62 71.0
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 1.6e-17 92.8 66 66.7
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 2.7e-17 92.0 66 66.7
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 2.7e-17 92.0 66 66.7
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 4.6e-17 91.3 62 71.0
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 4.6e-17 91.3 66 65.2
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 4.6e-17 91.3 66 65.2
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 6.0e-17 90.9 65 66.2
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 6.0e-17 90.9 59 76.3
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 6.0e-17 90.9 66 66.7
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 1.7e-16 89.4 59 71.2
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 2.3e-16 89.0 72 61.1
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 3.9e-16 88.2 66 62.1
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 5.0e-16 87.8 66 65.2
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 5.0e-16 87.8 80 52.5
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 6.6e-16 87.4 66 68.2
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 8.6e-16 87.0 60 70.0
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 8.6e-16 87.0 72 59.7
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 8.6e-16 87.0 65 64.6
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 8.6e-16 87.0 69 58.0
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 1.1e-15 86.7 58 74.1
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 1.5e-15 86.3 66 57.6
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 2.5e-15 85.5 61 68.9
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 2.5e-15 85.5 65 63.1
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 2.5e-15 85.5 66 62.1
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 2.5e-15 85.5 58 70.7
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 3.3e-15 85.1 62 61.3
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 7.3e-15 84.0 63 65.1
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 9.5e-15 83.6 69 60.9
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 9.5e-15 83.6 69 60.9
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 1.2e-14 83.2 60 68.3
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 1.2e-14 83.2 63 63.5
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 1.2e-14 83.2 61 68.9
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 1.6e-14 82.8 69 58.0
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 1.6e-14 82.8 63 63.5
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 2.1e-14 82.4 62 61.3
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 2.8e-14 82.0 58 69.0
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 3.6e-14 81.6 65 63.1
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 4.7e-14 81.3 58 67.2
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 3.1e-13 78.6 97 44.3
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 3.1e-13 78.6 58 63.8
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 3.1e-13 78.6 58 63.8
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 3.1e-13 78.6 84 53.6
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 3.1e-13 78.6 57 68.4
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 3.1e-13 78.6 58 65.5
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 5.2e-13 77.8 57 68.4
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 6.8e-13 77.4 71 53.5
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 8.9e-13 77.0 61 65.6
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 1.5e-12 76.3 58 62.1
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 3.4e-12 75.1 91 47.3
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 3.4e-12 75.1 64 57.8
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 7.5e-12 73.9 58 60.3
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 7.5e-12 73.9 83 47.0
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 1.7e-11 72.8 58 60.3
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 1.7e-11 72.8 58 60.3
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 2.2e-11 72.4 58 60.3
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.4e-10 67.8 53 64.2
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 2.7e-09 65.5 36 83.3
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 4.6e-09 64.7 61 47.5
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 3.9e-08 61.6 59 55.9
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 6.6e-08 60.8 53 52.8
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 3.6e-06 55.1 80 41.2
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 4.7e-06 54.7 39 59.0


User provided reference genes

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