Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.7e-149 531.2 269 100.0
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 9.2e-145 516.9 261 99.6
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.2e-109 400.2 260 80.8
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.0e-108 395.2 265 78.5
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 8.9e-108 394.0 264 79.5
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 5.8e-107 391.3 260 79.6
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.1e-105 387.1 260 78.5
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.1e-96 356.3 261 72.8
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 6.0e-96 354.8 261 72.4
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 9.6e-94 347.4 261 71.6
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.8e-93 345.9 268 69.4
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.6e-93 345.5 249 73.5
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 2.4e-92 342.8 259 71.0
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 2.6e-91 339.3 257 72.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 2.6e-91 339.3 262 71.0
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 9.9e-91 337.4 262 71.0
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.9e-90 335.9 260 70.8
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 6.4e-90 334.7 262 69.5
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.1e-89 334.0 261 68.6
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.1e-89 334.0 253 71.5
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.9e-89 333.2 261 68.2
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.7e-88 329.3 261 67.4
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.5e-88 328.9 259 70.3
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 7.9e-88 327.8 259 69.9
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 7.9e-88 327.8 259 69.9
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.3e-87 327.0 262 69.8
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.8e-87 326.6 261 68.6
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 6.7e-87 324.7 253 70.0
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 8.7e-87 324.3 259 68.3
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.9e-86 323.2 307 59.6
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.3e-86 322.4 260 68.1
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 9.6e-86 320.9 257 67.3
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.3e-85 320.5 262 65.6
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.6e-85 320.1 266 66.2
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.6e-85 320.1 213 81.2
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 8.1e-85 317.8 260 67.3
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 8.1e-85 317.8 259 66.0
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 8.1e-85 317.8 259 66.0
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.4e-84 317.0 262 66.8
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 3.1e-84 315.8 261 65.9
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 4.0e-84 315.5 274 65.7
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 4.0e-84 315.5 259 65.3
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 5.3e-84 315.1 260 67.3
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.9e-84 314.7 262 65.6
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-83 313.5 263 66.9
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-83 313.5 263 66.9
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.0e-83 313.2 253 67.6
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.5e-83 312.0 256 66.8
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 7.6e-83 311.2 246 68.7
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.3e-82 310.5 256 65.2
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.2e-82 309.7 260 66.9
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.9e-82 308.5 262 66.8
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 4.9e-82 308.5 260 66.5
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 6.5e-82 308.1 269 65.8
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 8.4e-82 307.8 260 66.9
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 8.4e-82 307.8 261 65.5
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.4e-81 307.0 262 66.4
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.4e-81 307.0 258 65.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.9e-81 306.6 257 65.4
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.2e-81 305.8 261 64.8
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.2e-81 305.8 262 66.4
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.2e-81 305.8 261 64.8
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 4.2e-81 305.4 256 65.2
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.5e-81 305.1 252 65.5
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 7.1e-81 304.7 262 66.4
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 2.1e-80 303.1 264 64.4
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.7e-80 302.8 256 64.8
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 2.3e-79 299.7 257 63.8
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 5.1e-79 298.5 265 64.5
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 6.7e-79 298.1 260 63.1
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.5e-78 297.0 263 63.5
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 5.7e-78 295.0 250 61.6
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 5.7e-78 295.0 260 62.3
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.4e-76 289.7 265 63.0
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.1e-76 288.9 251 62.9
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 4.1e-76 288.9 267 62.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 1.2e-75 287.3 331 51.7
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 1.5e-75 287.0 262 63.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.5e-75 287.0 259 62.5
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.0e-75 286.6 254 61.8
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.6e-75 286.2 327 52.6
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 5.9e-75 285.0 266 62.0
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.0e-74 284.3 254 61.8
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 3.8e-74 282.3 263 63.1
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 5.0e-74 282.0 260 60.4
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.5e-74 281.6 262 61.1
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 4.2e-73 278.9 267 58.1
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.0e-71 274.2 262 59.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.3e-71 273.9 302 57.0
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.9e-70 270.0 242 65.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 4.3e-70 268.9 256 59.0
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.7e-70 268.5 269 57.6
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.7e-70 268.5 258 57.0
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.8e-69 265.4 254 59.4
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 8.2e-69 264.6 255 59.2
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.1e-68 264.2 268 59.0
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.4e-68 263.8 264 60.2
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.8e-68 263.5 260 59.6
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 3.1e-68 262.7 256 60.2
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 4.1e-68 262.3 258 57.8
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 5.3e-68 261.9 262 57.6
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.3e-68 261.9 258 56.2
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 9.1e-68 261.2 261 58.2
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.2e-67 260.8 253 59.3
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 4.5e-67 258.8 258 55.8
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 7.7e-67 258.1 248 62.5
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.0e-66 257.7 253 58.9
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.3e-66 257.3 259 57.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.2e-66 256.5 240 63.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 3.8e-66 255.8 267 57.7
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.4e-65 253.8 263 57.4
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.4e-65 253.8 262 57.6
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.4e-65 253.8 260 58.8
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.2e-65 252.7 251 59.0
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.2e-64 250.8 271 53.5
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.2e-64 250.8 261 54.0
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.0e-63 246.1 260 54.6
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.1e-62 244.2 259 55.6
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 5.7e-62 241.9 250 56.8
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.3e-61 240.7 263 53.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.8e-61 239.6 187 72.2
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 1.1e-60 237.7 258 55.4
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.4e-60 237.3 253 57.7
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.8e-60 236.9 253 57.7
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 3.1e-60 236.1 255 54.9
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 3.1e-60 236.1 255 55.3
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.1e-60 235.7 261 54.0
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 5.3e-60 235.3 255 55.7
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 6.9e-60 235.0 255 55.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 6.9e-60 235.0 255 53.7
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 6.9e-60 235.0 255 53.7
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 4.5e-59 232.3 256 55.9
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 5.9e-59 231.9 195 69.2
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.0e-58 231.1 253 55.3
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.0e-58 231.1 253 55.3
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 5.0e-58 228.8 167 76.6
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 5.0e-58 228.8 258 54.3
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 5.5e-57 225.3 253 55.3
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-56 224.2 253 54.5
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 2.1e-56 223.4 241 53.9
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.4e-55 220.7 254 51.2
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.1e-52 211.1 240 50.8
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.2e-50 203.4 248 53.2
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 6.8e-39 165.2 116 74.1
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 6.3e-37 158.7 241 44.4
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.7e-34 150.6 145 56.6
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.6e-30 136.7 251 38.6
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 5.9e-27 125.6 240 36.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 7.5e-22 108.6 147 46.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 8.3e-21 105.1 238 34.9
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.3e-18 97.1 148 43.2
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 3.9e-18 96.3 101 54.5
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 1.7e-13 80.9 153 37.9
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 5.0e-10 69.3 295 24.4
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 2.5e-09 67.0 72 48.6
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.5e-09 67.0 74 50.0
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.4e-07 61.2 42 76.2
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.4e-07 61.2 44 72.7


User provided reference genes

Program Settings