Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 0.0e+00 1208.7 620 100.0
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 0.0e+00 1109.4 633 91.9
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.4e-304 1047.7 659 85.3
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.1e-265 919.8 634 76.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.7e-264 915.2 632 76.4
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.1e-261 904.0 628 79.6
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 8.9e-260 900.2 634 76.0
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 3.2e-257 891.7 621 75.7
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.1e-237 825.9 628 69.7
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 4.1e-233 811.6 638 67.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 7.1e-233 810.8 687 64.2
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 9.2e-233 810.4 636 69.2
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 2.5e-230 802.4 631 66.7
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 4.3e-230 801.6 637 66.9
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.1e-229 799.3 639 67.8
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 6.4e-226 787.7 625 66.4
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 6.0e-224 781.2 625 66.1
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 7.8e-224 780.8 639 64.5
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.7e-223 779.6 622 65.4
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.0e-223 778.9 637 65.8
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.5e-222 776.5 627 66.3
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.5e-222 775.8 633 66.2
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 3.3e-222 775.4 633 64.5
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 5.6e-222 774.6 618 65.9
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.3e-221 773.5 635 65.0
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.3e-221 773.5 639 66.7
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.1e-221 772.7 623 66.3
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.1e-220 770.4 629 66.5
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 2.4e-220 769.2 665 64.1
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.0e-219 766.1 597 67.8
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 2.6e-219 765.8 635 64.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 5.8e-219 764.6 635 64.6
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.1e-217 760.4 623 65.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.2e-216 756.9 626 65.7
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.9e-214 749.6 601 64.2
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.5e-214 749.2 636 62.6
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.3e-213 746.9 615 63.9
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 6.2e-213 744.6 628 62.1
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 2.0e-211 739.6 589 64.5
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.9e-209 733.0 627 61.9
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 5.4e-209 731.5 630 61.7
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 7.1e-209 731.1 598 65.6
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 3.5e-208 728.8 633 61.8
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 3.0e-207 725.7 634 61.8
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 6.7e-207 724.5 637 62.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.1e-206 723.8 623 63.9
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.5e-206 723.4 623 62.6
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.9e-206 723.0 592 64.7
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 7.4e-206 721.1 596 63.3
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 2.4e-204 716.1 625 62.9
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 9.0e-204 714.1 634 62.8
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.2e-203 713.8 603 62.7
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.0e-202 710.7 639 62.4
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.2e-202 709.5 633 62.7
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.2e-202 709.5 620 61.3
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.1e-201 707.2 595 64.4
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.4e-201 706.8 596 64.3
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.2e-201 705.3 643 59.4
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 7.9e-200 701.0 597 61.5
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 6.7e-199 698.0 604 60.8
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.5e-198 696.8 606 62.4
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 1.9e-198 696.4 608 61.7
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 6.2e-197 691.4 580 62.8
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.1e-196 690.6 609 62.2
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 4.1e-196 688.7 604 60.8
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 9.0e-196 687.6 603 60.9
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.5e-195 686.8 570 63.5
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.6e-195 686.0 598 61.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 3.4e-195 685.6 593 61.7
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 4.5e-195 685.3 632 61.1
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 7.6e-195 684.5 592 60.3
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.7e-194 683.3 608 59.9
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.4e-193 680.2 616 59.1
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.4e-193 680.2 616 59.1
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.4e-193 680.2 591 60.2
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 3.2e-193 679.1 637 58.1
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 4.2e-193 678.7 631 61.0
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 7.2e-193 677.9 588 60.9
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.1e-192 676.4 577 62.9
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 2.3e-191 672.9 602 59.8
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 5.1e-191 671.8 618 59.1
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 6.7e-191 671.4 604 59.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.3e-190 669.1 606 59.1
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 3.3e-190 669.1 603 58.9
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 9.7e-190 667.5 598 59.5
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.4e-188 663.7 642 57.2
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 3.1e-188 662.5 635 57.5
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.0e-187 659.8 604 60.4
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.0e-186 657.5 590 58.5
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 6.5e-186 654.8 647 56.0
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.0e-183 647.5 627 56.0
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.5e-182 642.9 609 58.9
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 5.9e-179 631.7 628 58.0
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.0e-178 630.9 642 55.5
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.8e-178 629.0 627 58.9
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 2.7e-176 622.9 626 55.0
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.7e-173 613.6 588 56.3
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 3.7e-173 612.5 507 63.5
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 7.2e-169 598.2 617 53.5
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.8e-167 593.6 617 52.8
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 5.2e-167 592.0 617 51.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 6.7e-167 591.7 588 56.0
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.7e-165 587.0 510 62.0
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.4e-164 583.2 596 56.2
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 4.5e-163 578.9 555 56.6
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 4.7e-160 568.9 587 55.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 3.8e-154 549.3 626 52.7
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.5e-145 520.8 480 61.9
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 5.2e-143 512.3 465 60.0
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 7.3e-137 491.9 624 46.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 9.8e-126 454.9 591 47.2
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.5e-121 440.3 596 44.5
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.4e-119 434.5 618 42.4
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 4.7e-112 409.5 389 59.1
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 3.9e-106 389.8 479 49.3
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.3e-93 348.2 552 41.8
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 6.4e-93 345.9 373 55.8
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 6.7e-90 335.9 267 65.5
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.1e-80 304.3 353 50.4
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 9.0e-79 298.9 345 51.3
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 5.0e-77 293.1 381 46.2
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 5.7e-73 279.6 280 56.8
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 6.1e-67 259.6 212 65.1
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.8e-64 250.8 179 77.7
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.0e-61 242.3 220 58.2
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.7e-61 241.5 215 57.7
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.9e-60 238.0 303 44.2
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.5e-60 236.5 250 51.6
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 9.4e-60 235.7 318 40.9
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 2.9e-53 214.2 119 86.6
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.2e-48 198.0 114 82.5
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.8e-47 194.9 175 61.1
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.7e-45 188.3 231 42.9
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.7e-45 188.3 152 67.1
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.2e-43 182.2 194 47.9
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.2e-40 171.4 243 42.0
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 6.3e-40 169.9 134 68.7
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.8e-39 168.3 144 63.2
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.6e-38 165.2 283 34.3
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 1.1e-36 159.1 102 74.5
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.6e-35 155.2 164 53.7
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.8e-34 151.8 124 62.9
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 6.8e-34 149.8 117 64.1
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.1e-31 142.5 73 91.8
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.0e-30 138.3 119 67.2
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 2.7e-30 137.9 225 40.4
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.6e-29 132.9 290 31.0
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.1e-27 128.3 126 61.9
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 4.0e-26 124.0 87 73.6
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 8.9e-26 122.9 87 73.6
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 3.4e-25 120.9 179 43.6
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 3.7e-24 117.5 108 56.5
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 8.3e-24 116.3 65 83.1
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.0e-21 109.4 141 44.0
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.0e-21 107.1 70 74.3
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 8.6e-21 106.3 74 75.7
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 7.3e-20 103.2 181 35.9
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.2e-18 97.1 97 55.7
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 4.4e-17 94.0 83 65.1
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 9.8e-17 92.8 79 62.0
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 3.7e-16 90.9 150 42.7
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.2e-11 75.9 49 75.5
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 2.0e-09 68.6 49 59.2
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 2.2e-08 65.1 48 58.3
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 8.3e-08 63.2 123 34.1
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 9.2e-07 59.7 73 50.7


User provided reference genes

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