Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 0.0e+00 1095.5 561 100.0
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 0.0e+00 1095.5 561 100.0
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.6e-279 965.7 561 88.1
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 5.0e-278 960.7 561 86.6
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 9.1e-272 939.9 557 86.7
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 2.2e-270 935.3 562 84.0
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 2.9e-270 934.9 561 85.2
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 4.0e-267 924.5 562 84.2
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 4.0e-267 924.5 562 83.5
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 4.4e-266 921.0 561 83.4
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 2.8e-265 918.3 561 84.5
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 2.8e-265 918.3 561 84.1
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 8.3e-265 916.8 562 83.1
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.4e-264 916.0 563 83.7
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 2.4e-264 915.2 561 83.4
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 4.1e-264 914.4 562 82.4
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 3.5e-263 911.4 562 83.5
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.0e-262 909.8 562 83.1
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 1.0e-262 909.8 612 79.1
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 8.6e-262 906.7 561 82.0
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 5.6e-261 904.0 601 78.2
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 5.6e-261 904.0 562 82.0
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.2e-260 902.9 562 82.6
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.8e-259 899.0 562 82.2
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 6.8e-259 897.1 561 82.0
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.2e-258 896.3 562 80.6
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.5e-258 896.0 562 82.0
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 3.4e-258 894.8 562 81.1
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.7e-257 892.5 626 75.2
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 1.6e-255 885.9 561 80.2
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.9e-254 881.3 561 80.0
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 6.6e-254 880.6 561 80.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 8.6e-254 880.2 562 80.2
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 7.3e-253 877.1 561 80.0
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.6e-252 875.9 562 78.5
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.0e-251 873.2 561 80.6
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 1.4e-251 872.8 561 79.0
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 4.0e-251 871.3 561 79.3
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 5.2e-251 870.9 561 79.5
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 2.6e-250 868.6 575 79.0
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 5.8e-250 867.5 562 79.2
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 5.8e-250 867.5 561 77.9
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 7.5e-250 867.1 561 79.1
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.9e-249 865.1 562 79.7
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.4e-248 862.8 561 78.6
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 2.4e-248 862.1 542 81.7
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.3e-246 856.3 561 79.3
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.6e-246 854.0 565 78.4
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 7.3e-245 850.5 561 77.5
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-244 849.7 557 78.6
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.6e-244 849.4 537 80.6
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.6e-244 849.4 562 77.6
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.6e-244 849.4 562 77.6
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.6e-244 849.4 565 77.2
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 8.1e-244 847.0 562 78.6
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 2.3e-243 845.5 562 77.0
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 5.2e-243 844.3 561 77.5
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 8.9e-243 843.6 560 78.2
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.5e-242 842.8 560 77.5
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.7e-241 839.3 515 82.5
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 2.3e-238 828.9 566 75.1
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.5e-237 826.2 576 76.6
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 4.3e-237 824.7 514 80.9
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 4.7e-236 821.2 562 74.9
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.8e-235 819.3 541 78.9
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.2e-234 816.6 648 68.5
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 2.4e-232 808.9 513 79.7
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 4.1e-232 808.1 561 74.2
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 8.6e-230 800.4 561 73.6
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 2.1e-228 795.8 542 75.6
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 2.1e-228 795.8 594 72.9
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 4.0e-227 791.6 562 72.1
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 7.6e-226 787.3 562 70.8
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 1.9e-224 782.7 562 71.4
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 6.0e-223 777.7 562 71.4
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 2.3e-222 775.8 532 75.0
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 3.9e-222 775.0 562 71.2
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.9e-221 772.7 562 71.7
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 4.3e-221 771.5 512 77.0
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 7.3e-221 770.8 576 69.8
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 1.3e-220 770.0 562 71.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.3e-220 770.0 563 71.0
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.3e-220 770.0 563 71.0
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.4e-219 766.5 562 70.6
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.4e-218 761.9 563 70.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.4e-218 761.9 562 70.5
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 4.4e-218 761.5 562 69.4
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.4e-216 756.5 533 73.0
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.3e-214 750.0 562 70.3
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 2.3e-206 722.6 476 77.3
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 5.7e-197 691.4 393 89.1
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 2.0e-186 656.4 432 73.1
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 7.2e-176 621.3 434 71.9
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 4.4e-173 612.1 563 56.8
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 3.7e-172 609.0 562 56.8
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.2e-168 595.5 554 59.4
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.7e-167 592.8 569 55.5
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 6.5e-161 571.6 568 54.4
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.0e-157 560.1 339 85.8
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.9e-153 546.2 566 50.2
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.0e-150 537.7 382 73.0
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 2.7e-138 496.5 306 84.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.5e-138 496.1 524 56.1
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 7.0e-131 471.9 340 70.6
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 4.3e-128 462.6 349 69.6
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 3.0e-121 439.9 356 60.7
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 1.9e-104 384.0 260 72.3
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.2e-85 321.6 542 37.6
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 4.8e-79 299.7 208 77.4
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 6.5e-76 289.3 198 73.7
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.7e-66 257.3 197 71.6
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.5e-64 251.5 144 84.0
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.7e-57 226.1 180 58.3
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.4e-56 222.6 130 84.6
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 7.0e-46 189.5 161 63.4
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 9.5e-35 152.5 90 75.6
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 8.0e-34 149.4 180 49.4
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 2.6e-32 144.4 178 48.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 9.8e-32 142.5 157 53.5
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 9.8e-32 142.5 157 53.5
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.7e-29 134.4 101 69.3
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.9e-27 128.3 131 56.5
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 2.1e-26 124.8 167 47.3
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 8.9e-25 119.4 129 55.8
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.7e-23 114.0 77 70.1
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 1.8e-22 111.7 58 93.1
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 5.8e-16 90.1 81 58.0
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 2.2e-15 88.2 87 57.5
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.4e-14 85.5 90 54.4
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 1.7e-07 62.0 160 25.6
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 2.9e-07 61.2 140 25.7
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 6.4e-07 60.1 172 23.3
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.1e-06 59.3 47 70.2
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 4.1e-06 57.4 162 22.8
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 4.1e-06 57.4 47 51.1
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 7.1e-06 56.6 161 23.0
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 9.2e-06 56.2 160 22.5


User provided reference genes

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