Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035305 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D011666 4.1e-62 241.1 114 100.0
DCAR_018667 Daucus carota HOM05D000475 ORTHO05D000343 2.3e-20 102.4 129 38.8
SGA_v2.0_scaffold240G44069 Striga asiatica HOM05D000475 ORTHO05D000343 1.5e-19 99.8 188 34.0
Peaxi162Scf00009g01231 Petunia axillaris HOM05D000475 ORTHO05D000343 1.9e-19 99.4 119 46.2
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 9.6e-19 97.1 119 42.9
Migut.L02045 Erythranthe guttata HOM05D000475 ORTHO05D000343 1.6e-18 96.3 126 40.5
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 4.8e-18 94.7 146 35.6
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 6.2e-18 94.4 152 34.9
Dinv12172 Davidia involucrata HOM05D000475 ORTHO05D014148 3.1e-17 92.0 64 67.2
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 5.3e-17 91.3 118 39.8
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 9.0e-17 90.5 108 44.4
Actinidia11548 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.2e-16 90.1 63 66.7
Solyc10g076330.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.2e-16 90.1 157 37.6
Hma1.2p1_0501F.1_g167350 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 2.6e-16 89.0 62 66.1
CSS0041803 Camellia sinensis var. sinensis HOM05D015228 ORTHO05D011666 3.4e-16 88.6 45 91.1
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 3.4e-16 88.6 63 66.7
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 7.6e-16 87.4 109 44.0
Rhsim03G0110100 Rhododendron simsii HOM05D000475 ORTHO05D011666 9.9e-16 87.0 69 62.3
Solyc09g015120.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.3e-15 86.7 56 69.6
QL05p049129 Quercus lobata HOM05D000475 ORTHO05D000343 1.7e-15 86.3 102 42.2
arahy.Tifrunner.gnm1.ann1.BL5G13 Arachis hypogaea HOM05D000475 ORTHO05D000343 2.2e-15 85.9 114 39.5
Medtr7g070320 Medicago truncatula HOM05D000475 ORTHO05D000343 2.2e-15 85.9 119 37.0
Os01g0165200 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 2.9e-15 85.5 107 36.4
Sopen09g008410 Solanum pennellii HOM05D000475 ORTHO05D000343 2.9e-15 85.5 56 67.9
PGSC0003DMG400011862 Solanum tuberosum HOM05D000475 ORTHO05D000343 4.9e-15 84.7 110 45.5
TAR633G1711 Trochodendron aralioides HOM05D000475 ORTHO05D000343 4.9e-15 84.7 62 59.7
AUR62030756 Chenopodium quinoa HOM05D000475 ORTHO05D000343 6.4e-15 84.3 186 30.6
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 6.4e-15 84.3 54 70.4
Dinv35407 Davidia involucrata HOM05D000475 ORTHO05D000343 8.4e-15 84.0 62 62.9
HanXRQChr01g0007041 Helianthus annuus HOM05D000475 ORTHO05D000343 1.9e-14 82.8 57 63.2
CAN.G1288.8 Capsicum annuum HOM05D000475 ORTHO05D000343 3.2e-14 82.0 71 56.3
RcHm_v2.0_Chr3g0461581 Rosa chinensis HOM05D000475 ORTHO05D000343 3.2e-14 82.0 130 39.2
CAN.G6.22 Capsicum annuum HOM05D000475 ORTHO05D011666 7.1e-14 80.9 117 37.6
PGSC0003DMG400011621 Solanum tuberosum HOM05D000475 ORTHO05D000343 9.3e-14 80.5 53 67.9
Atru.chr8.2340 Acer truncatum HOM05D000475 ORTHO05D000343 1.6e-13 79.7 76 55.3
Dinv21798 Davidia involucrata HOM05D000475 ORTHO05D000343 2.7e-13 79.0 63 54.0
Peaxi162Scf00744g00336 Petunia axillaris HOM05D000475 ORTHO05D000343 6.0e-13 77.8 53 66.0
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.0e-12 77.0 102 41.2
Nitab4.5_0001226g0100 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.0e-12 77.0 52 67.3
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 1.3e-12 76.6 103 41.7
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 1.3e-12 76.6 55 61.8
Cc06_g00720 Coffea canephora HOM05D000475 ORTHO05D000343 1.8e-12 76.3 53 66.0
Ca_07698_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 2.3e-12 75.9 73 49.3
Aqoxy1G01279 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 3.0e-12 75.5 68 50.0
CAN.G1225.6 Capsicum annuum HOM05D000475 ORTHO05D000343 3.0e-12 75.5 106 38.7
Ah.12g059110 Amaranthus hybridus HOM05D000475 ORTHO05D000343 3.9e-12 75.1 70 51.4
MELO3C033863.2 Cucumis melo HOM05D015228 ORTHO05D011666 3.9e-12 75.1 112 35.7
Oeu038716.1 Olea europaea HOM05D000475 ORTHO05D000343 3.9e-12 75.1 54 64.8
CAN.G1363.5 Capsicum annuum HOM05D000222 ORTHO05D011666 5.1e-12 74.7 56 60.7
CSS0035168 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 6.7e-12 74.3 63 52.4
Atru.chr8.2339 Acer truncatum HOM05D015228 ORTHO05D011666 1.1e-11 73.6 68 50.0
COL.COLO4_24866 Corchorus olitorius HOM05D000475 ORTHO05D000343 1.1e-11 73.6 127 31.5
Psat3g124320 Pisum sativum HOM05D000475 ORTHO05D000343 1.1e-11 73.6 61 52.5
TPR.G40566 Trifolium pratense HOM05D000475 ORTHO05D011666 1.1e-11 73.6 115 37.4
GSVIVG01030266001 Vitis vinifera HOM05D000475 ORTHO05D000343 1.1e-11 73.6 63 54.0
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 1.5e-11 73.2 108 34.3
Duzib128G1179 Durio zibethinus HOM05D000475 ORTHO05D000343 2.5e-11 72.4 54 63.0
Nitab4.5_0001703g0060 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.5e-11 72.4 53 60.4
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 3.3e-11 72.0 121 33.1
Gohir.A09G168100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.3e-11 72.0 63 54.0
Gohir.D09G164100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.3e-11 72.0 63 54.0
Nitab4.5_0000355g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.3e-11 72.0 54 61.1
Aqoxy3G02296 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 4.3e-11 71.6 69 42.0
Lj2A66G60 Lonicera japonica HOM05D000475 ORTHO05D000343 5.6e-11 71.2 59 55.9
CAN.G756.29 Capsicum annuum HOM05D000222 ORTHO05D012343 7.4e-11 70.9 53 58.5
Eucgr.G03101 Eucalyptus grandis HOM05D000475 ORTHO05D011666 9.6e-11 70.5 111 35.1
Gorai.006G185700 Gossypium raimondii HOM05D000475 ORTHO05D000343 9.6e-11 70.5 63 52.4
Nitab4.5_0003850g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 9.6e-11 70.5 54 59.3
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 9.6e-11 70.5 125 31.2
TWI77G0406 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 9.6e-11 70.5 62 53.2
Lsat_1_v5_gn_2_125761 Lactuca sativa HOM05D000475 ORTHO05D000343 1.3e-10 70.1 107 31.8
Sopen10g027980 Solanum pennellii HOM05D001655 ORTHO05D000343 1.6e-10 69.7 56 58.9
HanXRQChr16g0510201 Helianthus annuus HOM05D000475 ORTHO05D000343 2.1e-10 69.3 54 55.6
PGR031G2393 Punica granatum HOM05D000475 ORTHO05D000343 2.1e-10 69.3 59 50.8
Sed0026269 Sechium edule HOM05D000475 ORTHO05D000343 2.1e-10 69.3 57 52.6
vmacro06936 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 2.1e-10 69.3 53 58.5
Aqoxy1G01277 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 3.6e-10 68.6 68 44.1
Nitab4.5_0004057g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.6e-10 68.6 53 60.4
Duzib093G0789 Durio zibethinus HOM05D000475 ORTHO05D000343 4.8e-10 68.2 54 61.1
ECA236G0948 Erigeron canadensis HOM05D000475 ORTHO05D000343 4.8e-10 68.2 54 53.7
MBI15_g28858_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 4.8e-10 68.2 58 51.7
COL.COLO4_14448 Corchorus olitorius HOM05D000475 ORTHO05D000343 6.2e-10 67.8 63 49.2
TPR.G25494 Trifolium pratense HOM05D000475 ORTHO05D011666 6.2e-10 67.8 112 34.8
CANSAT35G0609 Cannabis sativa HOM05D000475 ORTHO05D000343 8.1e-10 67.4 62 48.4
Cpa.g.sc5.240 Carica papaya HOM05D000475 ORTHO05D000343 8.1e-10 67.4 63 47.6
Prupe.6G285100 Prunus persica HOM05D000475 ORTHO05D000343 1.1e-09 67.0 60 51.7
Sp6g40920 Schrenkiella parvula HOM05D000475 ORTHO05D000343 1.1e-09 67.0 130 33.1
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 1.4e-09 66.6 66 45.5
arahy.Tifrunner.gnm1.ann1.LAF8WM Arachis hypogaea HOM05D000475 ORTHO05D000343 1.8e-09 66.2 63 46.0
Ciclev10011220m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.8e-09 66.2 62 51.6
Zm00001eb282100 Zea mays HOM05D000475 ORTHO05D000343 1.8e-09 66.2 63 42.9
ATR0594G100 Amborella trichopoda HOM05D000475 ORTHO05D000343 2.4e-09 65.9 55 50.9
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 3.1e-09 65.5 54 46.3
GSVIVG01032736001 Vitis vinifera HOM05D000475 ORTHO05D000343 3.1e-09 65.5 57 49.1
Haze_21089 Corylus avellana HOM05D000475 ORTHO05D000343 4.0e-09 65.1 59 50.8
Lalb_Chr07g0191001 Lupinus albus HOM05D000475 ORTHO05D011666 4.0e-09 65.1 116 30.2
ClCG10G022460 Citrullus lanatus HOM05D000475 ORTHO05D000343 5.3e-09 64.7 51 52.9
PGSC0003DMG400011861 Solanum tuberosum HOM05D000475 ORTHO05D000343 5.3e-09 64.7 56 53.6
CiPaw.09G215600 Carya illinoinensis HOM05D000475 ORTHO05D000343 6.9e-09 64.3 54 51.9
CiPaw.10G160700 Carya illinoinensis HOM05D000475 ORTHO05D000343 9.0e-09 63.9 51 56.9
Actinidia33894 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.2e-08 63.5 51 56.9
CDE07G1739 Ceratophyllum demersum HOM05D000475 ORTHO05D000343 1.2e-08 63.5 93 35.5
Cc02_g05890 Coffea canephora HOM05D000475 ORTHO05D000343 1.2e-08 63.5 58 48.3
FvH4_6g10591 Fragaria vesca HOM05D000475 ORTHO05D000343 1.2e-08 63.5 53 54.7
Peaxi162Scf00284g00231 Petunia axillaris HOM05D000475 ORTHO05D000343 1.2e-08 63.5 59 44.1
CiPaw.02G196700 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.5e-08 63.2 61 47.5
ECA248G1682 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.5e-08 63.2 63 46.0
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 1.5e-08 63.2 129 30.2
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 1.5e-08 63.2 55 49.1
Nitab4.5_0001106g0120 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.5e-08 63.2 144 27.1
PSO478G1812 Papaver somniferum HOM05D000475 ORTHO05D000343 1.5e-08 63.2 52 46.2
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 1.5e-08 63.2 63 42.9
SEGI_03593 Sequoiadendron giganteum HOM05D000475 ORTHO05D043974 1.5e-08 63.2 68 48.5
SEGI_07421 Sequoiadendron giganteum HOM05D000475 ORTHO05D011666 1.5e-08 63.2 68 48.5
QL08p064006 Quercus lobata HOM05D000475 ORTHO05D000343 2.0e-08 62.8 57 45.6
Rhsim03G0148200 Rhododendron simsii HOM05D000475 ORTHO05D000343 2.0e-08 62.8 52 55.8
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 2.0e-08 62.8 97 34.0
TWI63G0323 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 2.0e-08 62.8 64 42.2
AUR62036403 Chenopodium quinoa HOM05D000475 ORTHO05D000343 2.6e-08 62.4 51 51.0
Sed0008589 Sechium edule HOM05D000475 ORTHO05D011666 2.6e-08 62.4 106 31.1
Manes.09G112000 Manihot esculenta HOM05D000475 ORTHO05D000343 4.5e-08 61.6 48 58.3
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 4.5e-08 61.6 73 39.7
Sed0000701 Sechium edule HOM05D000475 ORTHO05D000343 5.8e-08 61.2 58 44.8
CANSAT56G0883 Cannabis sativa HOM05D000475 ORTHO05D000343 7.6e-08 60.8 60 46.7
MELO3C008322.2 Cucumis melo HOM05D000475 ORTHO05D000343 7.6e-08 60.8 109 32.1
MELO3C009131.2 Cucumis melo HOM05D000475 ORTHO05D000343 7.6e-08 60.8 61 44.3
CsaV3_3G033400 Cucumis sativus L. HOM05D000475 ORTHO05D000343 7.6e-08 60.8 61 44.3
MD12G1180100 Malus domestica HOM05D015228 ORTHO05D011666 7.6e-08 60.8 43 58.1
BcaC06g31981 Brassica carinata HOM05D000475 ORTHO05D000343 9.9e-08 60.5 144 30.6
Lalb_Chr03g0043501 Lupinus albus HOM05D000475 ORTHO05D000343 1.3e-07 60.1 63 41.3
Os05g0164900 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 1.3e-07 60.1 50 46.0
PSO017G1695 Papaver somniferum HOM05D000475 ORTHO05D000343 1.3e-07 60.1 53 47.2
Rhsim03G0148100 Rhododendron simsii HOM05D000475 ORTHO05D014148 1.3e-07 60.1 46 56.5
TPR.G21356 Trifolium pratense HOM05D000475 ORTHO05D011666 1.3e-07 60.1 89 39.3
Lalb_Chr01g0023371 Lupinus albus HOM05D000475 ORTHO05D000343 2.9e-07 58.9 53 47.2
Potri.016G127600 Populus trichocarpa HOM05D000475 ORTHO05D000343 3.8e-07 58.5 66 43.9
Zm00001eb282080 Zea mays HOM05D000475 ORTHO05D000343 3.8e-07 58.5 48 50.0
arahy.Tifrunner.gnm1.ann1.E8CB8M Arachis hypogaea HOM05D000475 ORTHO05D000343 4.9e-07 58.2 54 40.7
arahy.Tifrunner.gnm1.ann1.RFF9M1 Arachis hypogaea HOM05D000475 ORTHO05D000343 4.9e-07 58.2 54 40.7
EL10Ac5g12479 Beta vulgaris HOM05D000475 ORTHO05D000343 4.9e-07 58.2 64 45.3
AUR62012320 Chenopodium quinoa HOM05D000475 ORTHO05D000343 4.9e-07 58.2 175 25.1
Hund10892 Selenicereus undatus HOM05D000475 ORTHO05D000343 4.9e-07 58.2 46 54.3
Sc01g0005730 Simmondsia chinensis HOM05D000475 ORTHO05D000343 6.4e-07 57.8 50 48.0
HPP92_019706 Vanilla planifolia HOM05D000475 ORTHO05D000343 6.4e-07 57.8 50 46.0
C09p74700 Brassica napus HOM05D000475 ORTHO05D000343 8.4e-07 57.4 119 31.9
Eucgr.A00623 Eucalyptus grandis HOM05D000475 ORTHO05D000343 1.1e-06 57.0 58 50.0
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 1.4e-06 56.6 71 38.0
TPR.G8421 Trifolium pratense HOM05D000347 ORTHO05D011666 1.4e-06 56.6 80 37.5
ECA238G4258 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.9e-06 56.2 65 36.9
VMungo1383G1412 Vigna mungo HOM05D000475 ORTHO05D000343 1.9e-06 56.2 56 42.9
BcaNung03297 Brassica carinata HOM05D000475 ORTHO05D000343 2.4e-06 55.8 108 33.3
BolC9t60202H Brassica oleracea HOM05D000475 ORTHO05D000343 2.4e-06 55.8 108 33.3
A10p33760 Brassica napus HOM05D000475 ORTHO05D000343 3.2e-06 55.5 119 30.3
BraA10t45406Z Brassica rapa HOM05D000475 ORTHO05D000343 3.2e-06 55.5 119 30.3
Lj4g0019173 Lotus japonicus HOM05D000475 ORTHO05D000343 3.2e-06 55.5 106 29.2
MD04G1166900 Malus domestica HOM05D000475 ORTHO05D000343 3.2e-06 55.5 60 43.3
Nitab4.5_0002854g0040 Nicotiana tabacum HOM05D000475 ORTHO05D000343 4.2e-06 55.1 62 38.7
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 5.5e-06 54.7 79 35.4
arahy.Tifrunner.gnm1.ann1.PI8N4R Arachis hypogaea HOM05D000475 ORTHO05D000343 7.1e-06 54.3 58 41.4


User provided reference genes

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