Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 4.6e-60 234.6 135 100.0
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.7e-51 206.1 124 98.4
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.0e-43 180.3 124 74.2
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 5.6e-42 174.5 124 72.6
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 2.1e-41 172.6 124 79.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 2.8e-41 172.2 124 69.4
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 4.7e-41 171.4 124 82.3
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 4.7e-41 171.4 124 83.1
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 4.7e-41 171.4 124 71.8
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 1.4e-40 169.9 124 79.0
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.4e-40 169.9 123 78.9
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.8e-40 169.5 124 67.7
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 1.8e-40 169.5 124 67.7
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 2.3e-40 169.1 125 68.0
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 3.1e-40 168.7 124 82.3
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 4.0e-40 168.3 124 66.9
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.2e-40 167.9 124 79.8
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 5.2e-40 167.9 124 69.4
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 5.2e-40 167.9 124 79.8
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 6.8e-40 167.5 124 68.5
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.2e-39 166.8 124 79.0
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 1.2e-39 166.8 124 67.7
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.5e-39 166.4 124 80.6
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 1.5e-39 166.4 124 76.6
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 2.6e-39 165.6 124 78.2
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 3.4e-39 165.2 124 79.8
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 3.4e-39 165.2 124 78.2
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.4e-39 165.2 124 79.0
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.4e-39 165.2 124 75.0
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 4.4e-39 164.9 132 65.2
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 5.8e-39 164.5 132 65.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 5.8e-39 164.5 132 65.2
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 7.6e-39 164.1 124 77.4
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 9.9e-39 163.7 124 77.4
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 9.9e-39 163.7 124 77.4
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.3e-38 163.3 125 68.0
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 1.3e-38 163.3 124 78.2
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.3e-38 163.3 124 67.7
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-38 163.3 132 64.4
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.3e-38 163.3 122 68.0
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 1.7e-38 162.9 124 66.1
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.7e-38 162.9 124 67.7
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 2.9e-38 162.2 124 66.1
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 2.9e-38 162.2 124 66.1
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.9e-38 162.2 124 65.3
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 3.8e-38 161.8 124 76.6
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 3.8e-38 161.8 125 68.0
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 3.8e-38 161.8 124 75.0
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 4.9e-38 161.4 124 65.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 6.4e-38 161.0 124 76.6
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 6.4e-38 161.0 124 65.3
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 8.4e-38 160.6 124 75.8
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 8.4e-38 160.6 124 63.7
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 1.1e-37 160.2 124 75.8
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.1e-37 160.2 124 75.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.1e-37 160.2 124 75.0
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.4e-37 159.8 124 73.4
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.4e-37 159.8 124 77.4
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 1.9e-37 159.5 123 79.7
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.4e-37 159.1 124 62.9
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 2.4e-37 159.1 124 62.9
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.4e-37 159.1 124 62.9
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 2.4e-37 159.1 124 64.5
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.4e-37 159.1 124 62.1
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 4.1e-37 158.3 124 62.1
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 4.1e-37 158.3 124 64.5
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 5.4e-37 157.9 123 61.8
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 7.1e-37 157.5 124 76.6
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 9.2e-37 157.1 124 76.6
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 9.2e-37 157.1 125 71.2
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 1.2e-36 156.8 124 62.1
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.6e-36 156.4 124 61.3
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 6.0e-36 154.5 124 74.2
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 6.0e-36 154.5 124 61.3
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 6.0e-36 154.5 124 60.5
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 7.8e-36 154.1 124 60.5
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 7.8e-36 154.1 124 61.3
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.0e-35 153.7 123 61.8
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 1.3e-35 153.3 124 72.6
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 1.7e-35 152.9 124 61.3
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.7e-35 152.9 124 61.3
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.7e-35 152.9 126 60.3
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 1.7e-35 152.9 124 61.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.7e-35 152.9 124 61.3
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.7e-35 152.9 124 61.3
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.7e-35 152.9 124 60.5
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 3.9e-35 151.8 124 61.3
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 6.6e-35 151.0 124 60.5
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 6.6e-35 151.0 124 60.5
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 6.6e-35 151.0 124 60.5
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 6.6e-35 151.0 124 73.4
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 8.6e-35 150.6 124 61.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 8.6e-35 150.6 124 71.0
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 1.1e-34 150.2 124 59.7
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 1.1e-34 150.2 123 62.6
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.5e-34 149.8 123 61.8
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 1.9e-34 149.4 124 67.7
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.5e-34 149.1 124 60.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 2.5e-34 149.1 124 71.8
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 3.3e-34 148.7 124 69.4
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 4.3e-34 148.3 124 57.3
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 7.3e-34 147.5 124 58.9
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 9.6e-34 147.1 124 59.7
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 9.6e-34 147.1 125 61.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.2e-33 146.7 124 71.8
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 1.2e-33 146.7 122 59.8
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.6e-33 146.4 124 71.8
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 1.6e-33 146.4 124 71.8
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 2.1e-33 146.0 125 63.2
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 2.1e-33 146.0 124 70.2
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.6e-33 145.2 124 58.9
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 3.6e-33 145.2 117 59.0
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 3.6e-33 145.2 125 66.4
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 4.7e-33 144.8 124 71.8
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.4e-32 142.5 124 71.0
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 2.4e-32 142.5 124 58.9
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 3.1e-32 142.1 124 68.5
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 4.0e-32 141.7 124 67.7
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.4e-31 138.7 124 58.1
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.4e-31 138.7 124 54.0
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 7.6e-31 137.5 122 55.7
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.1e-29 133.7 124 54.0
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.4e-29 133.3 103 65.0
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 3.2e-29 132.1 102 66.7
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.1e-28 129.4 122 53.3
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.7e-27 124.0 98 79.6
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 8.7e-27 124.0 125 48.8
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.5e-26 123.2 124 51.6
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.6e-25 119.8 120 53.3
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.8e-25 119.0 123 44.7
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 2.8e-25 119.0 124 49.2
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 6.9e-24 114.4 72 80.6
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.9e-22 109.0 66 80.3
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 1.6e-20 103.2 113 53.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 8.7e-19 97.4 117 39.3
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.6e-17 93.2 124 48.4
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 4.0e-16 88.6 69 60.9
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 1.2e-15 87.0 122 35.2
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 3.2e-13 79.0 124 41.1
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 3.2e-13 79.0 124 41.1
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 7.1e-13 77.8 128 39.8
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 4.3e-10 68.6 123 28.5
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.8e-08 63.2 36 83.3
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 9.0e-08 60.8 61 52.5
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 8.4e-06 54.3 35 74.3
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 8.4e-06 54.3 35 74.3


User provided reference genes

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