Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 3.4e-138 495.0 247 100.0
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 2.8e-132 475.3 247 98.4
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 1.8e-107 392.9 247 79.4
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 4.2e-104 381.7 248 81.0
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 1.4e-102 376.7 249 79.9
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 2.6e-101 372.5 288 68.8
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 4.4e-101 371.7 247 78.1
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 1.7e-100 369.8 247 78.1
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 8.5e-97 357.5 248 75.0
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 4.2e-96 355.1 248 74.6
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 1.2e-95 353.6 248 73.8
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 1.2e-95 353.6 248 73.8
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 2.7e-95 352.4 247 73.7
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 1.0e-94 350.5 248 74.2
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 1.0e-94 350.5 250 74.8
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 5.2e-94 348.2 251 77.3
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 5.2e-94 348.2 246 74.0
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 6.8e-94 347.8 248 73.4
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 4.4e-93 345.1 247 72.9
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 1.3e-92 343.6 248 74.2
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 1.3e-92 343.6 249 72.3
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 2.2e-92 342.8 247 73.7
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 1.4e-91 340.1 248 74.6
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 1.8e-91 339.7 247 72.9
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 7.0e-91 337.8 249 75.5
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 9.1e-91 337.4 260 73.1
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 4.5e-90 335.1 252 71.4
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 1.7e-89 333.2 249 71.5
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 5.0e-89 331.6 251 71.3
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 4.2e-88 328.6 248 73.0
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 2.7e-87 325.9 267 67.4
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 3.6e-87 325.5 253 71.1
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 6.1e-87 324.7 245 72.2
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 6.1e-87 324.7 245 71.0
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 6.1e-87 324.7 247 70.0
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 1.4e-86 323.6 249 70.3
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.8e-86 323.2 248 69.4
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 2.3e-86 322.8 250 70.8
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 4.0e-86 322.0 250 70.4
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 4.0e-86 322.0 250 70.4
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 5.2e-86 321.6 245 69.0
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 1.5e-85 320.1 249 70.7
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 2.0e-85 319.7 253 70.8
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 2.0e-85 319.7 247 69.2
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 2.6e-85 319.3 248 69.4
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 2.6e-85 319.3 248 69.4
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 3.4e-85 318.9 250 69.6
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 4.4e-85 318.5 249 69.1
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 4.4e-85 318.5 245 66.9
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 5.7e-85 318.2 252 68.3
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 7.5e-85 317.8 249 70.3
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 7.5e-85 317.8 253 70.8
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 1.3e-84 317.0 277 65.3
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 2.8e-84 315.8 251 69.7
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 2.8e-84 315.8 251 69.7
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 4.9e-84 315.1 249 68.7
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 6.3e-84 314.7 251 68.9
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 1.1e-83 313.9 251 68.5
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.1e-83 313.9 251 68.5
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 1.1e-83 313.9 256 66.4
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 1.1e-83 313.9 253 67.6
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 1.8e-83 313.2 249 67.9
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 3.1e-83 312.4 247 68.4
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 3.1e-83 312.4 251 68.9
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 4.1e-83 312.0 248 68.5
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 5.4e-83 311.6 257 65.8
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 9.1e-83 310.8 250 67.6
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 1.6e-82 310.1 286 62.9
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 2.0e-82 309.7 248 67.3
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 2.0e-82 309.7 250 67.2
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 2.7e-82 309.3 250 66.0
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 4.5e-82 308.5 249 65.9
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 5.9e-82 308.1 225 68.9
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 7.7e-82 307.8 249 67.9
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 1.7e-81 306.6 230 70.4
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 6.6e-81 304.7 257 64.6
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 1.5e-80 303.5 249 66.7
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 2.5e-80 302.8 345 53.9
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 5.5e-80 301.6 255 64.3
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 7.2e-80 301.2 248 66.5
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 9.5e-80 300.8 256 63.7
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 1.6e-79 300.1 249 69.1
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 2.1e-79 299.7 160 86.2
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.7e-79 298.5 249 65.1
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.7e-79 298.5 249 65.1
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 5.2e-78 295.0 249 65.1
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 1.2e-77 293.9 274 60.6
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 2.0e-77 293.1 183 78.1
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 3.4e-77 292.4 247 65.6
Dinv35789 Davidia involucrata HOM05D006298 ORTHO05D008167 4.4e-77 292.0 191 81.2
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 3.2e-75 285.8 247 66.0
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 3.2e-75 285.8 247 66.0
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 3.2e-75 285.8 247 66.4
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 1.0e-73 280.8 247 65.6
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 1.3e-73 280.4 247 65.6
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 7.3e-72 274.6 258 59.7
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 3.2e-67 259.2 130 94.6
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 4.1e-67 258.8 173 73.4
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 2.0e-66 256.5 247 59.5
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 1.1e-64 250.8 247 58.3
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.6e-63 246.9 247 58.3
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 1.2e-58 230.7 222 55.0
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 4.6e-58 228.8 211 55.9
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 4.6e-58 228.8 184 62.0
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 9.5e-56 221.1 110 93.6
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 1.2e-55 220.7 130 82.3
Hma1.2p1_0205F.1_g086930 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 2.8e-55 219.5 157 75.2
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 8.4e-52 208.0 131 75.6
Zm00001eb403160 Zea mays HOM05D006298 ORTHO05D008167 1.9e-48 196.8 130 73.1
Medtr1g063100 Medicago truncatula HOM05D006298 ORTHO05D008167 9.6e-48 194.5 194 59.3
BcaC02g07569 Brassica carinata HOM05D006298 ORTHO05D008167 1.1e-43 181.0 200 59.0
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 2.8e-39 166.4 90 85.6
CSS0032719 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-34 150.2 96 83.3
CSS0023138 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-32 144.4 84 91.7
AagrBONN_evm.TU.Sc2ySwM_228.4347 Anthoceros agrestis HOM05D006298 ORTHO05D008167 2.5e-32 143.3 107 66.4
CBR_g45378 Chara braunii HOM05D006298 ORTHO05D008167 7.6e-29 131.7 91 68.1
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 1.7e-28 130.6 169 43.8
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 7.9e-26 121.7 114 60.5
BcaB01g03809 Brassica carinata HOM05D006298 ORTHO05D008167 7.4e-24 115.2 98 58.2
Medtr6g035275 Medicago truncatula HOM05D006298 ORTHO05D008167 2.4e-22 110.2 56 91.1
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 1.2e-18 97.8 49 87.8
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 2.5e-16 90.1 56 75.0
Ca_27221_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 4.5e-13 79.3 70 54.3
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 4.2e-11 72.8 38 76.3
Prupe.4G234300 Prunus persica HOM05D006298 ORTHO05D007008 6.3e-07 58.9 31 80.6
arahy.Tifrunner.gnm1.ann1.31G0Q2 Arachis hypogaea HOM05D006298 ORTHO05D082484 1.8e-06 57.4 34 67.6
Ca_27663_v3 Cicer arietinum L. HOM05D002033 ORTHO05D002181 1.8e-06 57.4 38 65.8


User provided reference genes

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