Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.2e-93 345.1 178 100.0
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.0e-88 330.1 178 96.6
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.2e-81 306.6 178 85.4
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.4e-77 292.4 178 83.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 6.2e-73 277.7 178 77.5
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 3.1e-72 275.4 176 79.0
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 2.0e-71 272.7 178 74.7
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.5e-63 246.5 154 81.2
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.1e-61 240.4 171 69.6
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.1e-61 240.4 178 69.1
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 4.2e-61 238.4 184 68.5
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 5.4e-61 238.0 178 68.0
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.6e-60 236.5 178 68.5
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.6e-60 235.0 178 68.5
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.3e-59 233.4 174 68.4
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.3e-59 233.4 178 66.3
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 5.1e-59 231.5 171 66.7
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 6.6e-59 231.1 178 66.9
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.5e-58 229.9 171 66.7
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.9e-58 229.6 171 67.8
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.3e-58 228.8 179 64.8
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 5.6e-58 228.0 170 69.4
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 5.6e-58 228.0 171 67.3
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 7.3e-58 227.6 171 67.3
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.1e-57 226.1 179 64.2
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.1e-56 223.8 179 63.1
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.3e-54 216.9 168 67.3
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.7e-54 216.5 163 66.9
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.7e-54 216.5 163 66.9
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.7e-54 216.5 178 62.4
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.8e-54 215.3 178 70.2
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.1e-53 213.8 170 65.9
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.9e-53 213.0 168 63.7
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 2.4e-53 212.6 177 63.3
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 7.1e-53 211.1 168 65.5
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.2e-52 210.3 169 65.1
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.5e-52 208.8 168 62.5
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.6e-52 208.4 201 56.2
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.3e-51 206.1 166 60.8
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 2.3e-51 206.1 179 59.8
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 3.9e-51 205.3 172 59.9
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.3e-50 202.2 157 66.2
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 4.3e-50 201.8 175 60.0
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 5.6e-50 201.4 175 58.3
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 2.1e-49 199.5 154 66.2
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 4.8e-49 198.4 173 59.0
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.4e-48 196.1 178 57.9
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 3.1e-48 195.7 154 65.6
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.1e-48 195.7 154 65.6
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 3.1e-48 195.7 175 60.0
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.3e-48 194.9 174 56.9
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.5e-47 193.4 174 58.0
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 5.8e-47 191.4 174 56.9
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 9.9e-47 190.7 174 57.5
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 9.9e-47 190.7 171 57.9
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.7e-46 189.9 172 58.1
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.7e-46 189.9 175 56.6
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.9e-46 189.1 165 59.4
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.8e-46 188.7 175 56.6
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 8.4e-46 187.6 173 54.3
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.1e-45 187.2 171 56.7
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 1.4e-45 186.8 166 57.8
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.9e-45 186.4 164 58.5
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.9e-45 186.4 164 58.5
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 2.4e-45 186.0 176 56.8
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 2.4e-45 186.0 179 54.2
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 7.1e-45 184.5 162 56.8
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.2e-44 183.7 153 62.7
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.2e-44 183.7 155 61.3
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.6e-44 183.3 176 54.0
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.6e-44 183.3 176 55.7
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.7e-44 182.6 178 53.9
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.7e-44 182.6 178 53.9
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 7.9e-44 181.0 177 54.2
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 7.9e-44 181.0 226 46.5
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.0e-43 180.6 222 47.7
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.3e-43 180.3 171 55.6
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.3e-43 179.5 176 55.7
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 5.1e-43 178.3 173 56.6
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.7e-43 177.6 138 65.2
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.5e-42 176.0 230 46.1
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 2.5e-42 176.0 152 61.2
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 3.3e-42 175.6 172 52.9
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 3.3e-42 175.6 177 55.4
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 5.6e-42 174.9 165 57.0
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 9.6e-42 174.1 172 55.8
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.6e-41 173.3 174 53.4
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.1e-41 172.9 149 63.8
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.8e-41 172.6 189 50.8
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 2.8e-41 172.6 173 55.5
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 8.2e-41 171.0 153 58.8
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 8.2e-41 171.0 163 57.1
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 8.2e-41 171.0 133 66.9
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 5.3e-40 168.3 174 50.0
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.2e-39 167.2 156 56.4
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 2.6e-39 166.0 162 56.8
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.4e-39 165.6 162 56.2
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.4e-39 165.6 179 50.3
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 4.5e-39 165.2 173 52.6
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 1.0e-38 164.1 179 49.7
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.7e-38 163.3 161 53.4
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.2e-38 162.9 130 62.3
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 3.8e-38 162.2 154 53.9
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 8.4e-38 161.0 172 49.4
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.5e-37 159.5 173 49.7
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 3.2e-37 159.1 167 53.3
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 5.5e-37 158.3 165 49.1
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 9.3e-37 157.5 132 63.6
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 4.6e-36 155.2 271 38.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 7.9e-36 154.5 179 46.9
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 7.9e-36 154.5 179 46.9
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 7.9e-36 154.5 171 49.7
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.0e-35 154.1 152 54.6
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 5.1e-35 151.8 174 48.9
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.1e-34 150.6 151 54.3
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.5e-34 150.2 165 46.7
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 3.3e-34 149.1 130 57.7
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 4.3e-34 148.7 140 56.4
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 2.2e-33 146.4 136 58.8
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 2.2e-33 146.4 172 47.1
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 6.3e-33 144.8 134 58.2
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.1e-32 144.1 160 51.9
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.3e-32 141.7 154 51.9
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.0e-31 139.8 165 44.2
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 3.4e-31 139.0 86 72.1
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 8.5e-30 134.4 178 44.9
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.1e-29 134.0 178 47.8
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.4e-29 133.7 173 42.8
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 5.5e-29 131.7 141 53.2
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.6e-28 130.2 176 42.6
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.1e-28 129.8 84 67.9
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.1e-28 129.8 108 67.6
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 6.1e-28 128.3 165 47.3
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.3e-27 126.3 160 46.9
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.3e-25 120.6 91 64.8
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.7e-25 119.0 143 54.5
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 3.9e-19 99.0 83 63.9
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 4.8e-17 92.0 110 53.6
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 6.3e-17 91.7 81 63.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 8.2e-17 91.3 91 57.1
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.1e-16 90.9 84 59.5
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 4.1e-16 89.0 81 61.7
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 5.3e-16 88.6 81 60.5
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.5e-15 87.0 88 58.0
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.0e-15 86.7 166 31.9
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.0e-15 86.7 169 33.7
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.1e-12 76.6 127 38.6
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 1.5e-10 70.5 61 60.7
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 3.7e-09 65.9 145 29.7
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 7.0e-08 61.6 72 51.4
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.1e-08 61.2 76 51.3
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 1.2e-07 60.8 71 52.1


User provided reference genes

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