Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1701.4 863 100.0
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 864 84.6
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1391.3 858 82.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1376.7 857 82.4
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1353.2 857 79.5
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1315.1 861 79.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1310.4 863 77.9
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1308.9 862 78.1
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1291.2 857 76.0
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1286.6 876 74.9
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1282.3 863 75.7
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1276.2 860 75.3
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 863 76.6
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 864 76.4
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1261.1 859 75.0
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 867 73.6
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1248.4 856 74.5
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1248.0 864 73.4
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1241.1 869 73.3
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1236.1 859 74.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1234.6 862 73.3
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1234.6 863 73.3
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1232.6 863 75.0
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1232.2 863 73.7
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1231.5 868 74.2
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1231.1 857 75.1
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1230.7 857 73.3
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1228.8 869 70.2
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1228.4 860 73.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1228.4 857 73.2
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1221.8 869 70.0
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1220.7 869 69.9
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1220.3 858 73.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1220.3 860 73.6
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1219.9 864 71.5
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1219.5 882 71.5
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 864 73.1
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1212.6 882 70.7
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1210.3 863 73.5
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1208.0 893 70.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 859 72.4
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1204.1 859 72.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1203.7 875 71.3
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1203.0 868 72.4
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1202.6 877 71.7
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1201.0 859 72.2
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1198.0 866 71.4
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1198.0 884 70.9
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1197.6 859 72.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1196.4 861 72.5
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1195.3 863 72.5
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1192.9 870 71.6
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1188.7 899 69.4
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1188.3 859 72.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1186.0 863 71.7
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1185.2 864 71.3
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1183.3 835 72.7
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1182.5 870 69.4
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1176.0 865 71.1
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1174.1 868 69.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1172.5 858 70.9
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1170.6 859 69.6
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1167.5 870 68.7
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1166.8 869 69.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 859 70.1
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1163.7 861 69.5
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1163.7 868 68.9
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1163.7 868 68.9
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1163.3 868 68.9
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1162.5 868 68.9
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1162.5 865 69.1
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1161.7 881 70.0
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1160.6 867 70.6
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1158.7 868 68.7
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1157.5 861 67.7
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1156.0 862 68.8
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1155.6 862 68.4
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1151.0 865 68.6
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1148.3 877 67.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1145.6 865 69.4
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1136.3 939 65.3
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1135.6 825 72.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1116.7 871 66.5
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1114.0 862 67.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1110.1 858 68.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1109.4 858 68.2
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1107.8 871 67.3
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1107.4 812 70.8
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1105.1 864 66.3
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1104.4 868 64.7
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1103.2 868 66.7
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1101.7 835 68.7
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1095.9 870 65.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1091.3 863 64.9
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1084.3 824 68.4
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1084.3 821 68.3
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1082.4 869 66.2
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1081.2 824 67.5
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 1.0e-306 1056.6 870 65.1
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.0e-306 1056.6 858 64.1
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 1.9e-305 1052.4 863 65.2
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 6.2e-304 1047.3 856 64.6
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.2e-304 1047.3 850 64.9
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 5.3e-303 1044.3 894 61.9
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 6.9e-303 1043.9 873 63.1
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 5.8e-302 1040.8 856 64.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 8.4e-301 1036.9 865 64.3
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 3.9e-298 1028.1 820 67.4
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 8.7e-298 1026.9 884 62.4
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 1.5e-297 1026.2 864 62.8
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 2.6e-294 1015.4 631 82.9
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 2.5e-292 1008.8 803 66.3
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 2.0e-286 989.2 997 54.4
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.9e-286 987.6 777 67.8
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 5.5e-284 981.1 1011 53.7
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 6.7e-282 974.2 859 60.9
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 7.4e-281 970.7 858 59.7
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 3.7e-280 968.4 861 60.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 6.5e-277 957.6 864 60.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 4.2e-276 954.9 867 60.4
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 2.7e-275 952.2 864 59.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.5e-273 946.4 854 62.9
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 3.7e-272 941.8 867 57.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 2.0e-270 936.0 619 76.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.6e-259 899.8 870 57.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.0e-245 854.0 622 69.9
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.9e-245 852.4 644 68.9
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.9e-197 692.6 890 46.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.6e-193 679.9 881 46.4
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.7e-180 635.6 837 44.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.4e-164 582.0 875 42.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.3e-162 575.9 875 40.7
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 6.7e-157 558.9 1067 38.1
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.1e-151 541.6 554 52.0
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.0e-149 535.0 786 39.9
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.8e-146 524.2 536 54.9
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-108 398.7 351 64.7
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 3.7e-107 393.7 380 60.8
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.5e-105 387.1 240 83.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 6.4e-99 366.3 265 71.7
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 5.1e-96 356.7 208 86.1
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.4e-93 348.6 242 76.4
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 8.4e-83 312.8 240 68.3
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.8e-77 295.0 240 68.3
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-76 292.0 240 67.5
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 2.2e-62 245.0 222 55.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 4.3e-55 220.7 186 64.0
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 5.0e-51 207.2 301 47.5
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.5e-51 206.8 281 50.2
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.5e-47 195.7 150 74.7
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 5.5e-42 177.2 707 27.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.2e-40 170.6 90 80.0
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-38 165.6 150 56.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.9e-35 154.8 206 46.1
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.5e-34 152.5 121 67.8
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 8.0e-25 120.2 134 55.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.0e-24 118.2 82 72.0
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 6.8e-24 117.1 352 30.1
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.0e-23 115.5 96 59.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.7e-20 105.1 96 62.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 9.5e-18 96.7 98 52.0
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 9.5e-18 96.7 98 52.0
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 4.7e-17 94.4 80 60.0
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.0e-16 91.3 89 60.7
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 8.9e-16 90.1 64 60.9
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 2.0e-15 89.0 53 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 7.8e-12 77.0 50 72.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.8e-09 68.6 65 52.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 4.0e-08 64.7 80 47.5


User provided reference genes

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