Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035259 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-108 396.0 193 100.0
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.4e-102 375.6 187 97.3
CSS0038429 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.9e-102 374.0 187 96.8
vmacro00616 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 3.4e-101 371.7 188 94.1
vmacro00649 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 3.4e-101 371.7 188 94.1
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 1.4e-99 366.3 187 93.0
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 2.4e-99 365.5 187 92.5
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 4.2e-99 364.8 187 90.4
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 5.4e-99 364.4 187 89.8
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 7.1e-99 364.0 187 91.4
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 7.1e-99 364.0 187 92.0
Lj6C18T11 Lonicera japonica HOM05D003336 ORTHO05D003807 7.1e-99 364.0 186 93.5
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 9.3e-99 363.6 187 91.4
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 1.2e-98 363.2 187 91.4
Nn1g09612 Nelumbo nucifera HOM05D003336 ORTHO05D003807 1.2e-98 363.2 187 92.0
Haze_21691 Corylus avellana HOM05D003336 ORTHO05D003807 1.6e-98 362.8 185 93.0
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 1.6e-98 362.8 187 91.4
Dinv22743 Davidia involucrata HOM05D003336 ORTHO05D003807 2.7e-98 362.1 187 92.5
Cfa013247 Carpinus fangiana HOM05D003336 ORTHO05D003807 3.5e-98 361.7 185 92.4
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 3.5e-98 361.7 187 89.3
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 4.6e-98 361.3 186 90.9
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 6.0e-98 360.9 187 90.4
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 6.0e-98 360.9 187 92.0
Actinidia35985 Actinidia chinensis HOM05D003336 ORTHO05D003807 7.9e-98 360.5 185 92.4
Actinidia35987 Actinidia chinensis HOM05D003336 ORTHO05D003807 7.9e-98 360.5 185 92.4
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 1.3e-97 359.8 187 90.9
Ca_10458_v3 Cicer arietinum L. HOM05D003336 ORTHO05D003807 1.8e-97 359.4 185 90.8
Duzib175G0004 Durio zibethinus HOM05D003336 ORTHO05D003807 1.8e-97 359.4 186 90.3
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 1.8e-97 359.4 187 89.3
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 1.8e-97 359.4 187 90.4
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 2.3e-97 359.0 187 90.4
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 2.3e-97 359.0 187 89.8
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 3.0e-97 358.6 187 90.9
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 3.0e-97 358.6 187 90.9
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 3.0e-97 358.6 187 90.9
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 3.0e-97 358.6 186 89.2
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 3.0e-97 358.6 186 89.2
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 3.0e-97 358.6 187 88.8
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 3.0e-97 358.6 187 89.3
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 3.9e-97 358.2 187 90.4
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 3.9e-97 358.2 186 90.3
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 5.1e-97 357.8 186 88.2
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 8.7e-97 357.1 187 88.2
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 1.1e-96 356.7 187 89.8
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 1.5e-96 356.3 184 90.2
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 1.9e-96 355.9 187 88.8
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 1.9e-96 355.9 187 89.3
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 3.3e-96 355.1 184 90.8
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 3.3e-96 355.1 187 89.8
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 4.3e-96 354.8 187 88.8
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 4.3e-96 354.8 185 91.4
Aqoxy1G02652 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 9.6e-96 353.6 188 88.8
Peaxi162Scf00108g01317 Petunia axillaris HOM05D003336 ORTHO05D003807 9.6e-96 353.6 188 88.3
DCAR_026317 Daucus carota HOM05D003336 ORTHO05D003807 1.3e-95 353.2 187 87.7
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 1.6e-95 352.8 187 89.3
FvH4_7g04970 Fragaria vesca HOM05D003336 ORTHO05D003807 1.6e-95 352.8 187 89.3
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.6e-95 352.8 187 89.3
MBI01_g10303_MAGBIO Magnolia biondii HOM05D003336 ORTHO05D003807 1.6e-95 352.8 182 93.4
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 2.1e-95 352.4 186 87.1
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 2.8e-95 352.1 186 87.6
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 2.8e-95 352.1 186 88.7
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 3.7e-95 351.7 186 88.2
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 4.8e-95 351.3 186 87.1
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 4.8e-95 351.3 186 88.2
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 4.8e-95 351.3 186 87.1
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 4.8e-95 351.3 187 88.8
Nitab4.5_0000233g0220 Nicotiana tabacum HOM05D003336 ORTHO05D003807 8.1e-95 350.5 187 87.7
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 8.1e-95 350.5 186 87.1
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 1.1e-94 350.1 186 88.7
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.1e-94 350.1 186 88.7
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.1e-94 350.1 186 88.7
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 1.4e-94 349.7 187 85.6
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.8e-94 349.4 186 88.2
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 1.8e-94 349.4 187 86.6
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 2.4e-94 349.0 186 88.2
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 3.1e-94 348.6 187 86.1
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.1e-94 348.6 187 88.2
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 4.0e-94 348.2 186 87.6
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 6.9e-94 347.4 187 85.6
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 6.9e-94 347.4 187 85.6
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 9.0e-94 347.1 186 87.1
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.0e-94 347.1 187 87.7
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 1.2e-93 346.7 186 87.1
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 1.5e-93 346.3 187 87.2
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 2.6e-93 345.5 187 85.0
GSVIVG01010779001 Vitis vinifera HOM05D003336 ORTHO05D003807 2.6e-93 345.5 186 87.1
SalBow1G0055 Salvia bowleyana HOM05D003336 ORTHO05D003807 3.4e-93 345.1 185 86.5
SalBow1G1314 Salvia bowleyana HOM05D003336 ORTHO05D003807 3.4e-93 345.1 185 86.5
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 4.5e-93 344.7 187 85.0
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 4.5e-93 344.7 187 85.0
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 5.8e-93 344.4 187 85.0
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 5.8e-93 344.4 187 85.0
Cc04_g08960 Coffea canephora HOM05D003336 ORTHO05D003807 7.6e-93 344.0 185 87.0
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 1.3e-92 343.2 186 86.6
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 1.9e-91 339.3 184 86.4
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 2.5e-91 339.0 185 87.6
FAN17G2067 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.2e-91 338.2 185 87.0
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.7e-90 335.5 179 88.3
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.0e-90 334.3 188 88.3
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 1.3e-89 333.2 186 83.9
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-89 332.4 187 85.6
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.3e-89 332.4 187 85.6
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 3.9e-89 331.6 184 82.6
SEGI_08325 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 2.5e-88 328.9 184 83.2
Nitab4.5_0005460g0060 Nicotiana tabacum HOM05D003336 ORTHO05D003807 1.4e-86 323.2 172 89.0
MELO3C000960.2 Cucumis melo HOM05D003336 ORTHO05D003807 4.5e-85 318.2 165 91.5
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 1.7e-84 316.2 183 81.4
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 2.2e-84 315.8 184 78.8
BcaB07g33710 Brassica carinata HOM05D003336 ORTHO05D003807 2.2e-84 315.8 173 83.8
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 4.9e-84 314.7 184 79.3
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 1.4e-83 313.2 184 78.3
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 1.9e-83 312.8 183 79.8
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 9.3e-83 310.5 183 79.2
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 3.7e-79 298.5 187 77.5
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.6e-77 292.4 185 78.4
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 1.0e-76 290.4 181 75.7
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 5.0e-76 288.1 184 72.8
MELO3C028715.2 Cucumis melo HOM05D003336 ORTHO05D003807 4.6e-74 281.6 147 91.2
Sp7g20730 Schrenkiella parvula HOM05D003336 ORTHO05D003807 3.3e-72 275.4 152 82.9
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 5.7e-72 274.6 145 87.6
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 3.7e-71 271.9 146 89.0
CDE02G0747 Ceratophyllum demersum HOM05D003336 ORTHO05D003807 2.4e-70 269.2 182 72.5
Haze_26283 Corylus avellana HOM05D003336 ORTHO05D003807 5.3e-70 268.1 184 63.6
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 7.7e-69 264.2 141 88.7
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 5.0e-68 261.5 182 72.5
Lalb_Chr09g0333021 Lupinus albus HOM05D003336 ORTHO05D003807 1.6e-66 256.5 180 71.1
Sed0015341 Sechium edule HOM05D003336 ORTHO05D003807 1.6e-66 256.5 204 67.2
Lj6C12T9 Lonicera japonica HOM05D003336 ORTHO05D003807 8.2e-63 244.2 143 84.6
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.8e-62 243.0 167 75.4
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 2.4e-62 242.7 201 55.2
Potri.007G129400 Populus trichocarpa HOM05D003336 ORTHO05D003807 9.1e-62 240.7 136 83.8
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 2.6e-61 239.2 126 88.9
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.5e-61 238.8 199 64.8
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 1.2e-48 197.2 101 94.1
Atru.chr6.1069 Acer truncatum HOM05D003336 ORTHO05D003807 2.0e-45 186.4 109 81.7
Prupe.1G196100 Prunus persica HOM05D003336 ORTHO05D003807 3.2e-43 179.1 188 55.9
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 3.0e-41 172.6 105 78.1
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.7e-37 157.9 93 83.9
CSS0002456 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-36 156.8 188 52.7
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 3.0e-33 146.0 185 48.1
A08p15940 Brassica napus HOM05D003336 ORTHO05D003807 3.4e-32 142.5 109 65.1
CSS0009752 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.2e-31 139.8 101 69.3
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 4.9e-31 138.7 69 91.3
SEGI_10539 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 1.4e-30 137.1 93 69.9
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 1.8e-30 136.7 69 92.8
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 7.0e-30 134.8 69 92.8
Lalb_Chr05g0230051 Lupinus albus HOM05D003336 ORTHO05D003807 5.0e-28 128.6 67 91.0
CSS0004282 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 9.5e-27 124.4 107 65.4
CARHR113970 Cardamine hirsuta HOM05D003336 ORTHO05D003807 1.2e-26 124.0 71 85.9
Lj6C18T3 Lonicera japonica HOM05D003336 ORTHO05D003807 4.4e-24 115.5 113 56.6
Psat6g173760 Pisum sativum HOM05D003336 ORTHO05D003807 5.8e-24 115.2 63 88.9
RcHm_v2.0_Chr1g0329841 Rosa chinensis HOM05D003336 ORTHO05D003807 1.7e-23 113.6 64 85.9
CSS0005877 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.8e-21 104.8 102 58.8
BraA08t33567Z Brassica rapa HOM05D003336 ORTHO05D003807 3.9e-20 102.4 59 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2573 Anthoceros agrestis HOM05D001778 ORTHO05D005872 3.3e-19 99.4 67 65.7
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.3e-19 99.0 187 38.0
CSS0042287 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.6e-18 95.9 75 64.0
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 5.8e-16 88.6 187 33.7
Mapoly0019s0039 Marchantia polymorpha HOM05D005501 ORTHO05D007485 1.3e-15 87.4 189 30.2
AagrBONN_evm.TU.Sc2ySwM_117.1161 Anthoceros agrestis HOM05D005501 ORTHO05D007485 2.9e-15 86.3 194 31.4
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 2.9e-15 86.3 49 83.7
MCO07G252 Micromonas commoda HOM05D005501 ORTHO05D007485 3.7e-15 85.9 190 30.5
Pp3c15_10750 Physcomitrium patens HOM05D005501 ORTHO05D007485 1.1e-14 84.3 188 31.4
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 7.1e-14 81.6 42 83.3
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 9.2e-14 81.3 41 87.8
Cre15.g639400 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 7.8e-13 78.2 192 29.7
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 2.3e-12 76.6 191 28.8
Haze_26798 Corylus avellana HOM05D005501 ORTHO05D008444 2.3e-12 76.6 184 28.8
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 3.0e-12 76.3 191 30.4
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 3.0e-12 76.3 175 32.0
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 3.9e-12 75.9 175 32.0
SGA_v2.0_scaffold95G28910 Striga asiatica HOM05D005501 ORTHO05D007485 8.1e-10 68.2 203 28.1
Cre14.g615500 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 2.6e-08 63.2 124 30.6
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 4.4e-08 62.4 30 90.0
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 4.4e-08 62.4 30 90.0
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 3.7e-07 59.3 160 29.4
Lj4g0011036 Lotus japonicus HOM05D003336 ORTHO05D003807 6.4e-07 58.5 37 73.0
PRCOL_00001708 Prasinoderma coloniale HOM05D005501 ORTHO05D007485 6.4e-07 58.5 213 23.9
Lalb_Chr01g0020801 Lupinus albus HOM05D003336 ORTHO05D003807 1.9e-06 57.0 43 62.8


User provided reference genes

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