Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.6e-216 755.7 377 100.0
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 9.0e-215 750.0 377 98.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 1.5e-153 546.6 328 82.3
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.7e-144 516.5 382 70.9
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 3.2e-143 512.3 382 70.9
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 6.4e-128 461.5 381 64.8
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.2e-126 457.2 383 64.5
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.7e-125 453.4 384 63.5
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 5.1e-125 451.8 378 61.9
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 5.6e-124 448.4 335 67.2
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.2e-123 447.2 377 63.9
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 2.8e-123 446.0 359 66.9
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.1e-122 444.1 291 75.3
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 5.2e-122 441.8 373 62.7
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 2.0e-121 439.9 382 62.0
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 3.4e-121 439.1 377 61.8
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.3e-120 437.2 273 78.0
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 2.9e-120 436.0 381 61.9
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 8.4e-120 434.5 367 63.5
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.1e-119 434.1 377 61.3
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.4e-119 433.7 365 63.3
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.0e-117 427.6 365 61.9
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 3.0e-117 426.0 330 65.8
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 3.9e-117 425.6 330 65.8
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 6.6e-117 424.9 365 61.1
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 6.6e-117 424.9 330 66.1
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.1e-116 424.1 365 61.1
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 3.3e-116 422.5 356 62.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.1e-115 419.9 290 71.4
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.1e-114 417.5 379 59.9
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.1e-114 416.0 360 62.5
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 4.0e-114 415.6 376 59.0
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 9.0e-114 414.5 374 58.3
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.2e-113 414.1 272 73.9
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.2e-113 414.1 386 58.5
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 1.5e-113 413.7 378 60.1
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.5e-113 413.7 381 58.8
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.0e-113 413.3 376 60.9
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 2.0e-113 413.3 344 63.7
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 3.4e-113 412.5 375 59.5
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 4.4e-113 412.1 376 59.0
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 4.4e-113 412.1 375 58.7
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 5.8e-113 411.8 331 64.7
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 7.6e-113 411.4 376 58.2
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.3e-112 410.6 386 56.0
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 1.7e-112 410.2 379 59.4
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 2.9e-112 409.5 352 61.1
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.9e-112 409.5 348 62.9
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.9e-112 409.5 348 63.5
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 4.9e-112 408.7 374 58.0
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 4.9e-112 408.7 373 57.9
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 6.4e-112 408.3 377 59.4
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.4e-111 407.1 373 58.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 4.2e-111 405.6 382 58.6
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 7.1e-111 404.8 365 60.5
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 2.1e-110 403.3 276 72.1
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.7e-110 402.9 373 57.6
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 2.7e-110 402.9 321 64.8
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 3.5e-110 402.5 294 70.4
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 3.5e-110 402.5 327 64.8
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.3e-109 399.8 290 67.6
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 6.6e-109 398.3 374 57.8
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 6.6e-109 398.3 357 58.0
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.3e-107 394.0 290 68.3
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 2.1e-107 393.3 301 67.1
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 8.1e-107 391.3 288 67.7
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 8.1e-107 391.3 306 63.7
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.1e-106 391.0 296 65.2
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 2.4e-106 389.8 378 55.3
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 2.4e-106 389.8 379 55.1
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 3.1e-106 389.4 272 69.9
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 4.0e-106 389.0 379 55.4
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 4.0e-106 389.0 390 54.6
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.2e-105 387.5 379 55.4
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.2e-105 387.5 379 55.4
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.5e-105 387.1 377 55.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.0e-105 386.7 354 59.6
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.0e-105 386.7 308 63.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 9.9e-105 384.4 309 64.7
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 9.9e-105 384.4 376 56.9
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.3e-104 384.0 411 50.6
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 3.8e-104 382.5 388 54.1
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 8.4e-104 381.3 292 66.4
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.9e-103 380.2 295 63.1
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 7.1e-103 378.3 396 54.8
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.6e-102 377.1 379 54.9
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.5e-102 375.9 358 56.1
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.8e-101 373.6 297 64.3
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.3e-101 373.2 293 63.5
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 5.1e-101 372.1 386 55.2
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 8.7e-101 371.3 293 63.1
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 8.7e-101 371.3 344 58.4
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.3e-100 369.0 293 62.8
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 8.1e-99 364.8 341 59.2
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.6e-97 359.8 346 57.2
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 4.5e-97 359.0 395 51.4
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.4e-95 354.0 291 62.2
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 7.1e-95 351.7 469 45.0
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.6e-91 340.5 291 60.1
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.1e-91 340.1 246 66.7
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 4.8e-91 339.0 258 66.3
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.4e-90 337.4 408 49.5
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.8e-90 337.0 275 63.6
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.5e-89 332.4 257 65.4
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 5.9e-89 332.0 244 68.0
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.4e-87 327.4 344 54.1
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 4.2e-87 325.9 227 68.7
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 2.1e-86 323.6 273 59.3
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 6.1e-86 322.0 238 66.0
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 6.1e-86 322.0 274 60.9
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 3.2e-79 299.7 277 55.6
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 9.1e-74 281.6 241 62.7
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.3e-72 277.7 225 63.1
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 1.5e-68 264.2 230 59.6
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.4e-68 262.7 228 57.5
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 7.2e-63 245.4 232 53.4
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 7.2e-63 245.4 274 47.8
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 2.6e-60 236.9 306 46.7
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.2e-59 233.8 190 57.4
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 2.7e-41 173.7 140 58.6
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.3e-40 170.6 138 64.5
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 3.8e-40 169.9 203 44.8
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.1e-34 151.8 146 58.2
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.3e-23 113.6 68 79.4
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 8.1e-22 109.0 122 55.7
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 5.2e-21 106.3 296 29.7
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 3.8e-11 73.6 47 72.3
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 3.2e-10 70.5 80 43.8
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.1e-06 57.8 33 87.9


User provided reference genes

Program Settings