Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 3.6e-230 801.2 400 100.0
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 5.3e-189 664.5 399 81.5
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.9e-183 646.0 360 86.7
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 2.5e-183 645.6 399 81.5
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.6e-180 635.6 399 79.9
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.0e-179 633.6 399 80.2
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 7.4e-175 617.5 363 81.5
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 6.3e-174 614.4 401 78.1
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 4.1e-173 611.7 394 77.7
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.5e-172 609.8 394 77.7
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.5e-172 609.8 393 77.9
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 2.0e-172 609.4 405 77.8
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.0e-172 609.4 359 81.3
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.5e-172 608.2 394 77.4
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.3e-171 606.7 347 85.9
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.7e-171 606.3 394 77.2
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-171 606.3 394 77.2
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-171 606.3 394 76.9
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.7e-171 606.3 398 76.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 6.5e-171 604.4 401 75.3
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.4e-170 603.2 395 75.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 3.2e-170 602.1 367 78.7
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 3.2e-170 602.1 392 76.3
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 4.2e-170 601.7 394 76.1
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.1e-169 599.4 399 74.7
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 1.4e-168 596.7 405 75.3
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.8e-168 596.3 400 75.2
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.9e-168 595.1 401 75.3
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 5.1e-168 594.7 365 79.7
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.5e-167 593.2 400 73.2
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.5e-167 592.4 401 74.3
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 3.3e-167 592.0 376 76.6
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 9.7e-167 590.5 405 74.8
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-166 589.7 393 75.3
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 6.3e-166 587.8 366 79.0
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 4.1e-165 585.1 394 73.9
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 4.1e-165 585.1 402 74.9
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 6.9e-165 584.3 376 76.9
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 6.9e-165 584.3 402 74.1
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 9.1e-165 583.9 398 73.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-164 583.6 401 73.8
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.0e-164 582.8 402 73.9
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 1.3e-163 580.1 400 74.5
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 3.8e-163 578.6 403 73.0
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 6.5e-163 577.8 389 74.0
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 8.5e-163 577.4 363 77.4
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.1e-162 577.0 401 73.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.1e-162 577.0 400 70.8
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.4e-162 576.6 403 71.7
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.9e-162 576.2 368 78.0
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.1e-161 572.8 390 72.6
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 4.7e-161 571.6 362 76.5
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 7.9e-161 570.9 400 71.5
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 7.9e-161 570.9 362 76.2
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.0e-160 570.5 394 69.8
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 2.3e-160 569.3 365 77.5
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.3e-160 569.3 409 72.9
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 3.9e-160 568.5 403 71.5
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.5e-159 566.6 363 75.5
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.5e-159 566.6 397 71.8
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.5e-159 566.6 372 74.7
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.6e-159 565.8 366 76.8
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.3e-159 565.5 362 74.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.3e-159 565.5 409 73.3
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.3e-158 563.5 400 70.0
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 1.3e-158 563.5 399 69.7
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.3e-158 563.5 375 74.7
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 4.8e-158 561.6 401 69.3
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 8.2e-158 560.8 395 70.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.8e-157 559.7 400 70.0
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.4e-157 559.3 399 69.9
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 5.3e-157 558.1 361 75.1
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.5e-156 556.6 367 76.0
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 2.0e-156 556.2 364 73.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 3.5e-156 555.4 397 69.5
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.5e-154 550.1 392 72.2
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.9e-154 549.7 362 72.9
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.9e-154 549.7 394 71.8
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 5.5e-154 548.1 400 68.2
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 7.2e-154 547.7 361 72.6
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 7.2e-154 547.7 361 72.6
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.1e-153 546.2 404 68.1
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.1e-153 546.2 404 68.3
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.1e-153 546.2 404 68.3
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 1.4e-152 543.5 411 69.1
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.8e-152 543.1 385 70.1
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 2.3e-152 542.7 365 72.6
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.0e-152 542.0 399 70.4
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 6.7e-152 541.2 368 72.6
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 8.8e-152 540.8 364 74.7
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 8.8e-152 540.8 400 69.5
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.1e-151 540.4 405 67.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 3.3e-151 538.9 405 67.2
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 7.5e-151 537.7 402 68.7
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 6.3e-150 534.6 326 81.6
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-149 533.9 361 71.5
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.1e-149 533.9 399 69.9
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.4e-149 533.5 401 69.6
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.8e-149 533.1 359 71.3
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 8.5e-147 524.2 451 63.2
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 8.0e-145 517.7 402 66.4
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.8e-144 516.5 361 70.6
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.3e-144 516.2 398 69.1
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 2.3e-144 516.2 395 68.1
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.0e-144 515.8 365 69.9
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 7.5e-143 511.1 372 68.8
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 7.5e-143 511.1 361 70.1
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 2.4e-141 506.1 358 70.7
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.1e-141 505.4 401 67.1
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 2.7e-140 502.7 391 65.2
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.3e-139 500.4 362 69.1
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 5.0e-139 498.4 361 67.6
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 6.5e-139 498.0 365 67.4
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 5.5e-138 495.0 373 68.4
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.1e-137 493.0 362 68.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.1e-137 493.0 362 69.1
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 3.6e-137 492.3 403 63.0
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 9.8e-135 484.2 364 67.3
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 3.7e-134 482.3 305 76.7
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 3.7e-134 482.3 364 65.4
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 7.7e-132 474.6 364 65.9
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.3e-131 473.8 264 85.6
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 2.9e-131 472.6 362 66.9
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.5e-130 469.5 399 61.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 4.7e-129 465.3 279 81.0
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.4e-125 453.8 371 63.3
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 9.5e-122 441.0 380 61.6
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.8e-121 439.5 378 59.0
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.6e-116 422.2 362 58.8
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.4e-111 405.6 282 69.9
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-110 403.7 218 86.7
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.3e-99 367.5 281 65.1
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.9e-95 351.3 204 80.4
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.3e-94 350.9 201 81.1
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.3e-94 350.9 234 73.9
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 5.3e-88 328.9 355 49.0
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.2e-84 317.8 381 46.5
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 9.6e-82 308.1 345 47.8
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.1e-81 307.0 242 58.7
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.9e-77 293.9 217 63.1
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.3e-65 252.3 151 81.5
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.5e-63 247.7 279 45.5
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 5.9e-63 245.7 202 59.9
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.1e-60 237.3 151 78.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.0e-59 233.4 207 63.8
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 8.2e-57 225.3 203 58.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 2.2e-54 217.2 128 79.7
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.1e-52 210.7 205 60.5
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.7e-44 183.0 146 63.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 2.5e-37 160.6 82 87.8
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.6e-36 156.8 175 44.0
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 4.4e-34 149.8 232 40.9
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 2.8e-33 147.1 164 49.4
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.7e-31 139.0 206 38.3
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.5e-29 132.9 256 32.8
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 8.0e-28 129.0 171 42.7
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.8e-27 127.9 73 86.3
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 2.3e-27 127.5 321 30.8
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-24 118.2 64 82.8
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.1e-24 116.7 64 81.2
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.0e-24 115.9 64 81.2
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 4.5e-23 113.2 210 36.7
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 8.0e-20 102.4 122 45.9
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 1.0e-19 102.1 133 39.8
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 7.8e-15 85.9 52 78.8
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 4.3e-13 80.1 172 32.6
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 6.8e-11 72.8 89 42.7
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.6e-10 70.9 124 35.5
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 3.4e-10 70.5 67 49.3
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.7e-09 68.2 119 37.8
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.2e-09 67.8 38 76.3
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 1.3e-06 58.5 190 28.9
BolC2t07012H Brassica oleracea HOM05D004174 ORTHO05D004624 3.0e-06 57.4 48 56.2


User provided reference genes

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