Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 5.7e-130 467.6 239 100.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.1e-117 426.8 239 89.1
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.2e-116 423.3 236 89.8
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 4.6e-116 421.4 239 88.3
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.4e-114 414.8 239 86.2
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.3e-113 413.3 239 86.6
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.3e-113 413.3 239 84.9
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 4.1e-112 408.3 239 84.5
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.4e-111 405.2 236 85.6
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.3e-110 403.3 233 86.3
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.7e-110 402.9 236 84.7
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 2.2e-110 402.5 235 83.4
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.8e-110 401.7 233 85.0
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 8.5e-110 400.6 235 82.6
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 4.2e-109 398.3 239 80.8
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 5.5e-109 397.9 233 83.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 9.4e-109 397.1 239 82.0
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 1.6e-108 396.4 239 81.6
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.7e-108 395.6 236 81.4
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.7e-108 395.6 236 81.4
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 4.7e-108 394.8 233 84.5
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 6.1e-108 394.4 236 84.7
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 1.4e-107 393.3 239 80.8
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 3.0e-107 392.1 233 83.3
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.0e-107 392.1 233 82.8
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 3.9e-107 391.7 233 81.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 7.4e-106 387.5 236 78.8
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 3.7e-105 385.2 238 81.1
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 3.7e-105 385.2 237 81.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 6.3e-105 384.4 235 81.3
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.8e-104 382.9 306 66.3
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 4.1e-104 381.7 237 78.9
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.3e-104 381.3 239 77.8
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.2e-103 380.2 236 80.9
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.2e-103 380.2 238 77.7
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 5.9e-103 377.9 236 80.1
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 5.9e-103 377.9 236 80.1
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 5.9e-103 377.9 238 79.0
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 5.9e-103 377.9 236 78.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.0e-102 377.1 233 79.0
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.3e-102 376.7 236 79.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.3e-102 376.7 238 79.8
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 6.5e-102 374.4 235 75.3
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 8.5e-102 374.0 236 78.4
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.5e-101 373.2 233 77.3
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.9e-101 372.9 279 69.5
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.5e-101 372.5 237 79.7
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 5.5e-101 371.3 233 79.0
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 9.4e-101 370.5 236 79.2
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 9.4e-101 370.5 233 77.7
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.7e-100 369.0 233 76.8
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 3.6e-100 368.6 240 77.1
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 6.1e-100 367.9 236 78.4
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.4e-99 366.7 233 76.4
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.8e-99 366.3 238 75.2
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 3.0e-99 365.5 233 75.1
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.2e-98 363.6 260 69.6
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.0e-98 362.8 204 86.8
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.3e-98 362.1 228 78.5
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.4e-98 361.7 205 89.8
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 7.5e-98 360.9 233 75.1
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.7e-97 359.8 233 75.5
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.7e-97 359.8 236 74.6
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.7e-97 359.8 236 74.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 2.2e-97 359.4 233 74.7
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 2.2e-97 359.4 233 74.7
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.8e-97 358.2 233 73.8
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 6.3e-97 357.8 266 73.3
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.4e-96 356.7 234 75.2
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.4e-96 355.9 233 73.0
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 3.1e-96 355.5 238 74.4
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 9.1e-96 354.0 236 73.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.2e-95 353.6 204 86.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 4.5e-95 351.7 236 72.9
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 75.7
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.9e-95 351.3 204 86.3
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.7e-94 349.7 220 80.9
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 8.5e-94 347.4 272 65.1
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.5e-93 344.7 239 73.2
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.7e-92 342.4 236 70.3
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 3.6e-92 342.0 216 80.6
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.3e-91 339.3 233 75.5
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 4.0e-91 338.6 224 74.6
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.2e-90 337.0 239 70.3
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.5e-90 336.7 208 79.3
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.3e-89 333.6 206 80.1
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 2.4e-88 329.3 234 73.9
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 2.4e-88 329.3 234 73.9
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 5.4e-88 328.2 201 79.6
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 3.5e-87 325.5 203 78.8
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.5e-87 325.1 233 69.1
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 4.5e-87 325.1 238 66.8
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 3.8e-86 322.0 196 78.6
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 8.6e-86 320.9 232 70.7
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.9e-85 319.7 237 66.2
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 5.5e-85 318.2 233 67.0
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.5e-85 317.4 228 70.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.7e-84 315.1 221 71.0
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.2e-82 310.5 235 64.7
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 9.8e-82 307.4 190 77.9
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.7e-81 306.6 170 87.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 6.3e-81 304.7 188 81.4
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.4e-80 303.5 233 60.5
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 5.0e-78 295.0 230 62.6
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 5.0e-78 295.0 230 62.6
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 6.6e-78 294.7 230 63.5
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-77 293.9 236 63.1
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.1e-77 293.9 230 62.2
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.1e-77 293.9 230 62.6
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.5e-77 292.7 208 73.1
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 7.3e-77 291.2 185 76.2
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 6.1e-76 288.1 166 83.7
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.2e-74 283.9 153 90.8
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.4e-72 275.0 241 63.1
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 7.0e-72 274.6 232 56.0
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 9.2e-72 274.2 166 81.9
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.7e-71 272.7 233 62.2
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.6e-71 271.9 239 56.1
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.9e-70 268.9 224 59.8
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 7.3e-69 264.6 219 55.7
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 4.7e-68 261.9 150 83.3
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 3.4e-66 255.8 221 59.3
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 3.4e-66 255.8 226 58.0
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.0e-64 248.1 204 65.2
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.7e-55 219.5 129 84.5
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 6.0e-55 218.4 167 61.7
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.2e-49 199.9 135 71.9
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.2e-49 199.9 236 50.0
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.2e-49 199.9 135 73.3
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 6.4e-49 198.4 236 47.9
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 6.9e-43 178.3 236 44.9
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.4e-42 176.0 104 83.7
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 3.4e-42 176.0 111 77.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.2e-41 173.3 102 83.3
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.2e-40 169.1 106 75.5
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.9e-37 160.2 111 74.8
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 9.6e-37 157.9 265 41.1
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.9e-32 143.7 210 37.1
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 4.6e-31 139.0 76 82.9
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.5e-29 133.3 137 47.4
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.7e-28 129.4 215 34.9
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.2e-24 116.3 106 62.3
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-23 114.0 224 35.3
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-23 114.0 224 35.3
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 7.9e-23 111.7 74 70.3
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.3e-20 104.4 68 76.5
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.9e-17 92.4 56 76.8
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.4e-16 90.9 204 35.8
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 4.2e-16 89.4 51 84.3
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.0e-15 85.5 89 48.3
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.8e-14 84.0 49 79.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.8e-12 76.6 52 67.3
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 5.3e-11 72.4 48 70.8
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.4e-10 69.7 52 59.6
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 1.7e-09 67.4 53 62.3
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 5.5e-08 62.4 50 54.0
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 7.9e-07 58.5 75 48.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 7.9e-07 58.5 46 63.0


User provided reference genes

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