Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035202 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 8.9e-43 176.4 82 100.0
CSS0043241 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D001849 6.0e-31 137.1 81 80.2
Actinidia22891 Actinidia chinensis HOM05D001842 ORTHO05D001849 1.1e-08 63.2 88 45.5
Potri.002G008600 Populus trichocarpa HOM05D001842 ORTHO05D001849 1.1e-08 63.2 73 45.2
Sabra02G0006400 Salix brachista HOM05D001842 ORTHO05D001849 1.4e-08 62.8 73 45.2
CiPaw.07G136200 Carya illinoinensis HOM05D001842 ORTHO05D001849 2.5e-08 62.0 51 58.8
vmacro20625 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 2.5e-08 62.0 91 37.4
Cfa014111 Carpinus fangiana HOM05D001842 ORTHO05D001849 3.2e-08 61.6 56 55.4
MBI05_g33293_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 5.5e-08 60.8 91 40.7
Eucgr.F01786 Eucalyptus grandis HOM05D001842 ORTHO05D001849 9.3e-08 60.1 40 67.5
CiPaw.08G075300 Carya illinoinensis HOM05D001842 ORTHO05D001849 2.1e-07 58.9 75 44.0
Manes.01G155900 Manihot esculenta HOM05D001842 ORTHO05D001849 2.7e-07 58.5 37 67.6
Manes.18G003700 Manihot esculenta HOM05D001842 ORTHO05D001849 2.7e-07 58.5 71 45.1
Rhsim10G0194400 Rhododendron simsii HOM05D001842 ORTHO05D001849 2.7e-07 58.5 91 37.4
TWI09G0475 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 2.7e-07 58.5 37 67.6
Manes.05G124400 Manihot esculenta HOM05D001842 ORTHO05D001849 4.6e-07 57.8 40 62.5
MD05G1135500 Malus domestica HOM05D001842 ORTHO05D001849 6.1e-07 57.4 37 64.9
Phvul.008G292100 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 6.1e-07 57.4 38 65.8
HPP92_020703 Vanilla planifolia HOM05D001842 ORTHO05D001849 6.1e-07 57.4 67 41.8
HPP92_026381 Vanilla planifolia HOM05D001842 ORTHO05D001849 6.1e-07 57.4 67 41.8
CSS0003960 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 1.0e-06 56.6 34 70.6
CSS0024804 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.0e-06 56.6 37 64.9
CSS0030981 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.0e-06 56.6 37 64.9
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 1.0e-06 56.6 72 43.1
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 1.0e-06 56.6 68 50.0
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 1.0e-06 56.6 68 50.0
Prupe.8G179600 Prunus persica HOM05D001842 ORTHO05D001849 1.0e-06 56.6 37 64.9
QL11p056280 Quercus lobata HOM05D001842 ORTHO05D001849 1.0e-06 56.6 37 64.9
Sed0008264 Sechium edule HOM05D001842 ORTHO05D001849 1.0e-06 56.6 37 64.9
Sed0023090 Sechium edule HOM05D001842 ORTHO05D001849 1.0e-06 56.6 37 64.9
Thecc.08G062300 Theobroma cacao HOM05D001842 ORTHO05D001849 1.0e-06 56.6 50 56.0
Atru.chr3.124 Acer truncatum HOM05D001842 ORTHO05D001849 1.3e-06 56.2 37 62.2
Actinidia17353 Actinidia chinensis HOM05D001842 ORTHO05D001849 1.3e-06 56.2 34 67.6
Gohir.D07G178300 Gossypium hirsutum HOM05D001842 ORTHO05D001849 1.3e-06 56.2 83 41.0
Nitab4.5_0001467g0060 Nicotiana tabacum HOM05D001842 ORTHO05D001849 1.3e-06 56.2 37 64.9
Nitab4.5_0007782g0070 Nicotiana tabacum HOM05D001842 ORTHO05D001849 1.3e-06 56.2 37 64.9
QL02p015109 Quercus lobata HOM05D001842 ORTHO05D001849 1.3e-06 56.2 76 43.4
THA.LOC104813747 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 1.3e-06 56.2 40 62.5
TWI53G0649 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 1.3e-06 56.2 37 64.9
TWI56G1388 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 1.3e-06 56.2 76 43.4
VMungo0647G1618 Vigna mungo HOM05D001842 ORTHO05D001849 1.3e-06 56.2 38 63.2
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 1.8e-06 55.8 57 47.4
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 1.8e-06 55.8 37 64.9
Glyma.04G016600 Glycine max HOM05D001842 ORTHO05D001849 1.8e-06 55.8 49 57.1
Gorai.001G199400 Gossypium raimondii HOM05D001842 ORTHO05D001849 1.8e-06 55.8 83 41.0
HanXRQChr14g0442891 Helianthus annuus HOM05D001842 ORTHO05D001849 1.8e-06 55.8 65 44.6
GSVIVG01013392001 Vitis vinifera HOM05D001842 ORTHO05D001849 1.8e-06 55.8 67 41.8
Ah.00g001000 Amaranthus hybridus HOM05D001842 ORTHO05D001849 2.3e-06 55.5 107 36.4
arahy.Tifrunner.gnm1.ann1.1FV09I Arachis hypogaea HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 64.9
arahy.Tifrunner.gnm1.ann1.649J27 Arachis hypogaea HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 64.9
arahy.Tifrunner.gnm1.ann1.84FHQN Arachis hypogaea HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 64.9
arahy.Tifrunner.gnm1.ann1.RT0S28 Arachis hypogaea HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 64.9
Cpa.g.sc6.364 Carica papaya HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 62.2
CiPaw.05G092800 Carya illinoinensis HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 62.2
AUR62035136 Chenopodium quinoa HOM05D001842 ORTHO05D001849 2.3e-06 55.5 77 40.3
Ca_06502_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 2.3e-06 55.5 38 63.2
Haze_22829 Corylus avellana HOM05D001842 ORTHO05D001849 2.3e-06 55.5 56 51.8
Glyma.02G311333 Glycine max HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 64.9
Glyma.14G001200 Glycine max HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 64.9
Nn6g31683 Nelumbo nucifera HOM05D001842 ORTHO05D001849 2.3e-06 55.5 50 56.0
Phvul.009G012300 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 2.3e-06 55.5 71 43.7
Psat5g009840 Pisum sativum HOM05D001842 ORTHO05D001849 2.3e-06 55.5 70 47.1
RcHm_v2.0_Chr7g0215891 Rosa chinensis HOM05D001842 ORTHO05D001849 2.3e-06 55.5 62 46.8
RcHm_v2.0_Chr7g0219801 Rosa chinensis HOM05D001842 ORTHO05D001849 2.3e-06 55.5 62 46.8
Sc05g0006840 Simmondsia chinensis HOM05D001842 ORTHO05D001849 2.3e-06 55.5 37 62.2
TPR.G18637 Trifolium pratense HOM05D001842 ORTHO05D001849 2.3e-06 55.5 38 63.2
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 2.3e-06 55.5 94 39.4
Aa31LG7G4920 Aethionema arabicum HOM05D001842 ORTHO05D001849 3.0e-06 55.1 40 62.5
CiPaw.06G115800 Carya illinoinensis HOM05D001842 ORTHO05D001849 3.0e-06 55.1 37 59.5
Cc10_g00500 Coffea canephora HOM05D001842 ORTHO05D001849 3.0e-06 55.1 74 44.6
Duzib093G1115 Durio zibethinus HOM05D001842 ORTHO05D001849 3.0e-06 55.1 50 52.0
Glyma.06G016700 Glycine max HOM05D001842 ORTHO05D001849 3.0e-06 55.1 49 55.1
Gohir.A07G171600 Gossypium hirsutum HOM05D001842 ORTHO05D001849 3.0e-06 55.1 83 39.8
MBI08_g37961_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 3.0e-06 55.1 74 37.8
MD06G1007400 Malus domestica HOM05D001842 ORTHO05D001849 3.0e-06 55.1 68 45.6
Medtr5g099170 Medicago truncatula HOM05D001842 ORTHO05D001849 3.0e-06 55.1 60 48.3
Nitab4.5_0010095g0010 Nicotiana tabacum HOM05D001842 ORTHO05D001849 3.0e-06 55.1 65 43.1
Potri.005G253000 Populus trichocarpa HOM05D001842 ORTHO05D001849 3.0e-06 55.1 74 40.5
THA.LOC104809853 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 3.0e-06 55.1 79 43.0
BcaB03g12856 Brassica carinata HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
BcaB03g14302 Brassica carinata HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
BcaC06g34833 Brassica carinata HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
A07p15500 Brassica napus HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
C07p22830 Brassica napus HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
C08p20340 Brassica napus HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
BolC8t49662H Brassica oleracea HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
BraA07t29291Z Brassica rapa HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
Carub.0001s2021 Capsella rubella HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
Thhalv10006674m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
Lj1g0018894 Lotus japonicus HOM05D001842 ORTHO05D001849 3.9e-06 54.7 71 42.3
MD10G1140800 Malus domestica HOM05D001842 ORTHO05D001849 3.9e-06 54.7 37 62.2
Sp1g18460 Schrenkiella parvula HOM05D001842 ORTHO05D001849 3.9e-06 54.7 40 62.5
AL1G33750 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 5.1e-06 54.3 40 62.5
AT1G20760 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 5.1e-06 54.3 40 62.5
AT1G21630 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 5.1e-06 54.3 37 62.2
arahy.Tifrunner.gnm1.ann1.3BY6RX Arachis hypogaea HOM05D001842 ORTHO05D001849 5.1e-06 54.3 70 41.4
AUR62042905 Chenopodium quinoa HOM05D001842 ORTHO05D001849 5.1e-06 54.3 77 39.0
CsaV3_4G037410 Cucumis sativus L. HOM05D001842 ORTHO05D001849 5.1e-06 54.3 89 34.8
Lsat_1_v5_gn_2_1961 Lactuca sativa HOM05D001842 ORTHO05D001849 5.1e-06 54.3 76 38.2
Medtr3g115640 Medicago truncatula HOM05D001842 ORTHO05D001849 5.1e-06 54.3 73 46.6
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 5.1e-06 54.3 50 56.0
ATR0807G019 Amborella trichopoda HOM05D001842 ORTHO05D001849 6.7e-06 53.9 72 40.3
C05p19300 Brassica napus HOM05D001842 ORTHO05D001849 6.7e-06 53.9 40 60.0
BolC5t30637H Brassica oleracea HOM05D001842 ORTHO05D001849 6.7e-06 53.9 40 60.0
BolC7t42821H Brassica oleracea HOM05D001842 ORTHO05D001849 6.7e-06 53.9 40 62.5
BraA08t34863Z Brassica rapa HOM05D001842 ORTHO05D001849 6.7e-06 53.9 73 39.7
MELO3C013251.2 Cucumis melo HOM05D001842 ORTHO05D001849 6.7e-06 53.9 37 62.2
ECA238G3849 Erigeron canadensis HOM05D001842 ORTHO05D001849 6.7e-06 53.9 37 62.2
Gohir.D01G089100 Gossypium hirsutum HOM05D001842 ORTHO05D001849 6.7e-06 53.9 46 56.5
Gorai.002G114800 Gossypium raimondii HOM05D001842 ORTHO05D001849 6.7e-06 53.9 46 56.5
Hma1.2p1_0085F.1_g044600 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 6.7e-06 53.9 37 62.2
Lalb_Chr04g0246921 Lupinus albus HOM05D001842 ORTHO05D001849 6.7e-06 53.9 37 62.2
Psat2g000840 Pisum sativum HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 63.2
VMungo1309G0061 Vigna mungo HOM05D001842 ORTHO05D001849 6.7e-06 53.9 71 42.3
A06p16700 Brassica napus HOM05D001842 ORTHO05D001849 8.7e-06 53.5 40 60.0
BraA06t24785Z Brassica rapa HOM05D001842 ORTHO05D001849 8.7e-06 53.5 40 60.0
CSS0001048 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 8.7e-06 53.5 29 72.4
Dinv31963 Davidia involucrata HOM05D001842 ORTHO05D001849 8.7e-06 53.5 71 42.3
Lsat_1_v5_gn_8_112480 Lactuca sativa HOM05D001842 ORTHO05D001849 8.7e-06 53.5 37 59.5
Sed0009695 Sechium edule HOM05D001842 ORTHO05D001849 8.7e-06 53.5 51 51.0


User provided reference genes

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