Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.3e-32 142.5 74 100.0
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 5.6e-28 127.1 72 88.9
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 5.6e-28 127.1 72 90.3
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 7.3e-28 126.7 72 88.9
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 7.3e-28 126.7 70 92.9
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 9.6e-28 126.3 72 88.9
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 9.6e-28 126.3 72 88.9
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 3.6e-27 124.4 72 90.3
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 6.2e-27 123.6 72 87.5
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.4e-26 122.5 72 86.1
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.8e-26 122.1 72 87.5
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.1e-26 121.3 72 86.1
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 3.1e-26 121.3 72 86.1
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.1e-26 121.3 72 87.5
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 4.0e-26 120.9 72 86.1
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 4.0e-26 120.9 72 86.1
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 5.3e-26 120.6 69 89.9
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 1.2e-25 119.4 74 83.8
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.2e-25 119.4 72 81.9
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 2.0e-25 118.6 64 95.3
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 2.6e-25 118.2 62 96.8
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.6e-25 118.2 72 84.7
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 3.4e-25 117.9 73 86.3
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 5.8e-25 117.1 72 84.7
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 9.9e-25 116.3 73 86.3
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 9.9e-25 116.3 71 81.7
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.3e-24 115.9 71 87.3
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.3e-24 115.9 72 84.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 6.4e-24 113.6 70 82.9
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 6.4e-24 113.6 70 84.3
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 6.4e-24 113.6 67 88.1
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 8.4e-24 113.2 67 89.6
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 1.4e-23 112.5 72 80.6
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.4e-23 112.5 71 83.1
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.9e-23 112.1 72 83.3
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.9e-23 112.1 69 84.1
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 1.9e-23 112.1 59 94.9
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 2.4e-23 111.7 73 83.6
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.4e-23 111.7 71 84.5
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 2.4e-23 111.7 72 80.6
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 3.2e-23 111.3 71 80.3
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 3.2e-23 111.3 71 81.7
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 4.2e-23 110.9 72 81.9
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 4.2e-23 110.9 70 84.3
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 4.2e-23 110.9 73 82.2
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 4.2e-23 110.9 69 82.6
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 5.4e-23 110.5 71 78.9
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 5.4e-23 110.5 62 88.7
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 7.1e-23 110.2 73 82.2
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 7.1e-23 110.2 73 79.5
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.2e-22 109.4 70 81.4
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.2e-22 109.4 68 83.8
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-22 109.0 73 79.5
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 2.1e-22 108.6 73 76.7
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.1e-22 108.6 72 83.3
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 2.1e-22 108.6 61 90.2
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.1e-22 108.6 71 80.3
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.7e-22 108.2 70 82.9
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 2.7e-22 108.2 71 78.9
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 3.5e-22 107.8 71 80.3
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 4.6e-22 107.5 71 80.3
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 4.6e-22 107.5 64 85.9
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 4.6e-22 107.5 70 78.6
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 6.0e-22 107.1 68 79.4
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 6.0e-22 107.1 69 79.7
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 7.8e-22 106.7 62 88.7
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 7.8e-22 106.7 71 78.9
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 7.8e-22 106.7 69 79.7
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.0e-21 106.3 66 81.8
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.0e-21 106.3 64 84.4
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.3e-21 105.9 66 80.3
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.3e-21 105.9 62 85.5
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.7e-21 105.5 63 85.7
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.7e-21 105.5 63 85.7
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 72 77.8
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.7e-21 105.5 63 87.3
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 1.7e-21 105.5 68 80.9
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 2.3e-21 105.1 73 72.6
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 3.0e-21 104.8 69 78.3
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.9e-21 104.4 71 77.5
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 3.9e-21 104.4 68 77.9
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 6.6e-21 103.6 59 91.5
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 6.6e-21 103.6 71 76.1
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-20 102.8 58 86.2
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 1.5e-20 102.4 69 76.8
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.5e-20 101.7 74 75.7
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 76.4
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.3e-20 101.3 71 76.1
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 3.3e-20 101.3 67 74.6
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 4.3e-20 100.9 69 78.3
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.3e-20 100.9 68 76.5
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 4.3e-20 100.9 71 70.4
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 5.6e-20 100.5 69 78.3
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 5.6e-20 100.5 68 75.0
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 7.3e-20 100.1 58 87.9
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 7.3e-20 100.1 62 83.9
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 63 76.2
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 7.3e-20 100.1 71 74.6
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 9.6e-20 99.8 62 82.3
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 9.6e-20 99.8 62 82.3
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 9.6e-20 99.8 62 82.3
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 68 76.5
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 1.3e-19 99.4 62 82.3
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 1.3e-19 99.4 69 76.8
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 61 80.3
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 76.1
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.6e-19 99.0 70 74.3
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.6e-19 99.0 64 78.1
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.6e-19 99.0 64 78.1
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.6e-19 99.0 64 78.1
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.6e-19 99.0 62 80.6
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 62 80.6
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 62 80.6
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 62 75.8
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.8e-19 98.2 69 76.8
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 3.6e-19 97.8 62 82.3
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 3.6e-19 97.8 70 72.9
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 3.6e-19 97.8 69 72.5
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 4.8e-19 97.4 69 73.9
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 4.8e-19 97.4 55 89.1
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.2e-19 97.1 58 79.3
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 58 79.3
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 8.1e-19 96.7 69 71.0
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.1e-18 96.3 64 76.6
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.4e-18 95.9 64 76.6
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 2.4e-18 95.1 72 70.8
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 4.0e-18 94.4 67 74.6
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 4.0e-18 94.4 65 73.8
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 5.3e-18 94.0 63 73.0
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 5.3e-18 94.0 63 73.0
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.5e-17 92.4 73 67.1
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 4.5e-17 90.9 50 90.0
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 5.8e-17 90.5 54 81.5
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.3e-16 89.4 68 69.1
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 9.3e-15 83.2 55 74.5
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.7e-14 81.6 67 65.7
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.5e-14 81.3 67 65.7
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.5e-14 81.3 67 65.7
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 4.6e-14 80.9 74 63.5
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 6.0e-14 80.5 58 69.0
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.3e-13 79.3 67 64.2
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 3.9e-13 77.8 67 62.7
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 5.1e-13 77.4 58 63.8
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 5.1e-13 77.4 56 71.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 5.1e-13 77.4 56 71.4
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 5.1e-13 77.4 53 71.7
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 8.7e-13 76.6 61 60.7
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.1e-12 76.3 46 84.8
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.5e-12 75.1 46 84.8
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 5.6e-12 73.9 68 54.4
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.3e-11 72.8 61 59.0
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 2.1e-11 72.0 61 59.0
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.1e-10 69.7 53 71.7
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.4e-10 69.3 51 72.5
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 2.2e-08 62.0 33 90.9
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 4.9e-08 60.8 57 52.6
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 4.2e-07 57.8 35 82.9
Gohir.A12G267900 Gossypium hirsutum HOM05D004624 ORTHO05D005357 3.5e-06 54.7 26 100.0


User provided reference genes

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