Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035182 Camellia sinensis var. sinensis HOM05D002688 ORTHO05D002911 2.1e-54 215.3 101 100.0
Actinidia23255 Actinidia chinensis HOM05D002688 ORTHO05D002911 1.3e-22 109.8 62 77.4
Rhsim07G0059300 Rhododendron simsii HOM05D002688 ORTHO05D002911 4.8e-22 107.8 57 80.7
vmacro13703 Vaccinium macrocarpon HOM05D002688 ORTHO05D002911 7.7e-20 100.5 55 78.2
Manes.07G011700 Manihot esculenta HOM05D002688 ORTHO05D002911 5.0e-19 97.8 57 73.7
GSVIVG01001439001 Vitis vinifera HOM05D002688 ORTHO05D002911 2.5e-18 95.5 58 74.1
Nn7g36345 Nelumbo nucifera HOM05D002688 ORTHO05D002911 1.2e-17 93.2 59 69.5
ECA248G3893 Erigeron canadensis HOM05D002688 ORTHO05D002911 1.6e-17 92.8 63 66.7
Lsat_1_v5_gn_1_102320 Lactuca sativa HOM05D002688 ORTHO05D002911 2.7e-17 92.0 65 60.0
MSTRG.5046 Avicennia marina HOM05D002688 ORTHO05D002911 4.7e-17 91.3 62 58.1
Nn2g15180 Nelumbo nucifera HOM05D002688 ORTHO05D002911 6.1e-17 90.9 62 62.9
CiPaw.14G003800 Carya illinoinensis HOM05D002688 ORTHO05D002911 7.9e-17 90.5 55 72.7
Lj7C576G5 Lonicera japonica HOM05D002688 ORTHO05D002911 1.4e-16 89.7 63 63.5
SalBow6G5965 Salvia bowleyana HOM05D002688 ORTHO05D002911 1.8e-16 89.4 62 58.1
Gohir.A08G141400 Gossypium hirsutum HOM05D002688 ORTHO05D002911 2.3e-16 89.0 53 71.7
Gohir.D08G162500 Gossypium hirsutum HOM05D002688 ORTHO05D002911 2.3e-16 89.0 53 71.7
Gorai.004G168900 Gossypium raimondii HOM05D002688 ORTHO05D002911 2.3e-16 89.0 53 71.7
Cfa010823 Carpinus fangiana HOM05D002688 ORTHO05D002911 3.0e-16 88.6 55 70.9
CiPaw.13G008400 Carya illinoinensis HOM05D002688 ORTHO05D002911 3.9e-16 88.2 55 70.9
Hma1.2p1_0685F.1_g203300 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 3.9e-16 88.2 59 66.1
Migut.N01803 Erythranthe guttata HOM05D002688 ORTHO05D002911 8.8e-16 87.0 60 58.3
HanXRQChr01g0015671 Helianthus annuus HOM05D002688 ORTHO05D002911 8.8e-16 87.0 63 60.3
Potri.001G261000 Populus trichocarpa HOM05D002688 ORTHO05D002911 8.8e-16 87.0 57 68.4
Dinv07427 Davidia involucrata HOM05D002688 ORTHO05D002911 1.1e-15 86.7 68 58.8
Duzib133G1529 Durio zibethinus HOM05D002688 ORTHO05D002911 1.1e-15 86.7 61 60.7
Hma1.2p1_0269F.1_g107770 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 1.1e-15 86.7 53 73.6
Lalb_Chr01g0000511 Lupinus albus HOM05D002688 ORTHO05D002911 1.1e-15 86.7 53 69.8
TAR623G0984 Trochodendron aralioides HOM05D002688 ORTHO05D002911 1.1e-15 86.7 55 69.1
Oeu027367.2 Olea europaea HOM05D002688 ORTHO05D002911 2.0e-15 85.9 59 62.7
Thecc.01G404400 Theobroma cacao HOM05D002688 ORTHO05D002911 2.0e-15 85.9 69 58.0
COL.COLO4_12330 Corchorus olitorius HOM05D002688 ORTHO05D002911 2.6e-15 85.5 53 67.9
Glyma.12G010200 Glycine max HOM05D002688 ORTHO05D002911 2.6e-15 85.5 54 72.2
Hund02960 Selenicereus undatus HOM05D002688 ORTHO05D002911 7.4e-15 84.0 67 58.2
SGA_v2.0_scaffold354G49751 Striga asiatica HOM05D002688 ORTHO05D002911 9.7e-15 83.6 60 53.3
FAN01G1665 Fragaria x ananassa HOM05D002688 ORTHO05D002911 1.3e-14 83.2 59 62.7
FAN10G3609 Fragaria x ananassa HOM05D002688 ORTHO05D002911 1.3e-14 83.2 59 62.7
Manes.10G135200 Manihot esculenta HOM05D002688 ORTHO05D002911 1.3e-14 83.2 51 72.5
Peaxi162Scf01108g00331 Petunia axillaris HOM05D002688 ORTHO05D002911 1.3e-14 83.2 63 57.1
Sc14g0004970 Simmondsia chinensis HOM05D002688 ORTHO05D002911 1.3e-14 83.2 65 53.8
Cc02_g28990 Coffea canephora HOM05D002688 ORTHO05D002911 1.7e-14 82.8 63 57.1
RcHm_v2.0_Chr1g0318181 Rosa chinensis HOM05D002688 ORTHO05D002911 1.7e-14 82.8 59 64.4
VMungo1127G1560 Vigna mungo HOM05D002688 ORTHO05D002911 2.2e-14 82.4 54 68.5
Phvul.011G010500 Phaseolus vulgaris HOM05D002688 ORTHO05D002911 2.8e-14 82.0 54 68.5
HanXRQChr06g0179711 Helianthus annuus HOM05D002688 ORTHO05D002911 3.7e-14 81.6 63 55.6
Nitab4.5_0011487g0010 Nicotiana tabacum HOM05D002688 ORTHO05D002911 3.7e-14 81.6 63 52.4
PGR031G3541 Punica granatum HOM05D002688 ORTHO05D002911 4.8e-14 81.3 58 62.1
Ciclev10032531m.g Citrus clementina HOM05D002688 ORTHO05D002911 8.2e-14 80.5 69 55.1
Eucgr.G03283 Eucalyptus grandis HOM05D002688 ORTHO05D002911 8.2e-14 80.5 54 64.8
PSO339G1014 Papaver somniferum HOM05D002688 ORTHO05D002911 8.2e-14 80.5 58 60.3
CANSAT80G0975 Cannabis sativa HOM05D002688 ORTHO05D002911 1.1e-13 80.1 59 55.9
MD07G1022400 Malus domestica HOM05D002688 ORTHO05D002911 1.1e-13 80.1 53 71.7
CAN.G909.16 Capsicum annuum HOM05D002688 ORTHO05D002911 1.4e-13 79.7 62 51.6
FvH4_7g01670 Fragaria vesca HOM05D002688 ORTHO05D002911 1.4e-13 79.7 59 61.0
Glyma.09G226600 Glycine max HOM05D002688 ORTHO05D002911 1.8e-13 79.3 54 68.5
FAN03G1637 Fragaria x ananassa HOM05D002688 ORTHO05D002911 2.4e-13 79.0 60 58.3
Sed0003035 Sechium edule HOM05D002688 ORTHO05D002911 2.4e-13 79.0 59 57.6
Atru.chr11.2541 Acer truncatum HOM05D002688 ORTHO05D002911 3.1e-13 78.6 55 61.8
Aqoxy1G00319 Aquilegia oxysepala HOM05D002688 ORTHO05D002911 3.1e-13 78.6 59 57.6
ClCG09G004460 Citrullus lanatus HOM05D002688 ORTHO05D002911 3.1e-13 78.6 58 62.1
FAN03G0468 Fragaria x ananassa HOM05D002688 ORTHO05D002911 3.1e-13 78.6 59 59.3
FAN03G1555 Fragaria x ananassa HOM05D002688 ORTHO05D002911 3.1e-13 78.6 59 59.3
Medtr0003s0620 Medicago truncatula HOM05D002688 ORTHO05D002911 4.1e-13 78.2 53 66.0
Sabra09G0040700 Salix brachista HOM05D002688 ORTHO05D002911 4.1e-13 78.2 55 61.8
PSO384G1250 Papaver somniferum HOM05D002688 ORTHO05D002911 7.0e-13 77.4 58 58.6
MELO3C023588.2 Cucumis melo HOM05D002688 ORTHO05D002911 1.2e-12 76.6 59 59.3
Lj3g0020648 Lotus japonicus HOM05D002688 ORTHO05D002911 1.2e-12 76.6 54 64.8
Sabra16G0159600 Salix brachista HOM05D002688 ORTHO05D002911 1.2e-12 76.6 56 62.5
Cpa.g.sc125.56 Carica papaya HOM05D002688 ORTHO05D002911 2.0e-12 75.9 53 64.2
Sp5g02340 Schrenkiella parvula HOM05D002688 ORTHO05D002911 2.0e-12 75.9 58 55.2
THA.LOC104801972 Tarenaya hassleriana HOM05D002688 ORTHO05D002911 2.0e-12 75.9 54 61.1
TWI73G0483 Tripterygium wilfordii HOM05D002688 ORTHO05D002911 2.0e-12 75.9 61 50.8
PGSC0003DMG400006770 Solanum tuberosum HOM05D002688 ORTHO05D002911 2.6e-12 75.5 63 50.8
CDE02G4048 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 4.5e-12 74.7 57 54.4
CDE08G0966 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 4.5e-12 74.7 56 57.1
Ca_26317_v3 Cicer arietinum L. HOM05D002688 ORTHO05D002911 4.5e-12 74.7 47 74.5
MD02G1301500 Malus domestica HOM05D002688 ORTHO05D002911 4.5e-12 74.7 52 67.3
Psat7g146520 Pisum sativum HOM05D002688 ORTHO05D002911 4.5e-12 74.7 51 68.6
AT3G60910 Arabidopsis thaliana HOM05D002688 ORTHO05D002911 1.3e-11 73.2 64 48.4
ATR0680G068 Amborella trichopoda HOM05D002688 ORTHO05D002911 1.7e-11 72.8 57 54.4
A07p25270 Brassica napus HOM05D002688 ORTHO05D002911 1.7e-11 72.8 58 53.4
BraA07t30169Z Brassica rapa HOM05D002688 ORTHO05D002911 1.7e-11 72.8 58 53.4
Carub.0005s2766 Capsella rubella HOM05D002688 ORTHO05D002911 1.7e-11 72.8 58 53.4
Sopen01g034900 Solanum pennellii HOM05D002688 ORTHO05D002911 1.7e-11 72.8 65 49.2
BcaC08g45095 Brassica carinata HOM05D002688 ORTHO05D002911 2.2e-11 72.4 58 53.4
C06p27030 Brassica napus HOM05D002688 ORTHO05D002911 2.2e-11 72.4 58 53.4
BolC6t37875H Brassica oleracea HOM05D002688 ORTHO05D002911 2.2e-11 72.4 58 53.4
Solyc01g088000.4 Solanum lycopersicum HOM05D002688 ORTHO05D002911 2.2e-11 72.4 65 47.7
AL5G43230 Arabidopsis lyrata HOM05D002688 ORTHO05D002911 2.9e-11 72.0 58 51.7
Thhalv10006192m.g Eutrema salsugineum HOM05D002688 ORTHO05D002911 2.9e-11 72.0 59 52.5
unitig_22.g5874 Utricularia gibba HOM05D002688 ORTHO05D002911 2.9e-11 72.0 85 41.2
CsaV3_7G030680 Cucumis sativus L. HOM05D002688 ORTHO05D002911 3.8e-11 71.6 59 54.2
TPR.G8364 Trifolium pratense HOM05D002688 ORTHO05D002911 3.8e-11 71.6 55 65.5
arahy.Tifrunner.gnm1.ann1.KYFF3P Arachis hypogaea HOM05D002688 ORTHO05D002911 8.5e-11 70.5 51 62.7
arahy.Tifrunner.gnm1.ann1.UW2SL3 Arachis hypogaea HOM05D002688 ORTHO05D002911 8.5e-11 70.5 51 62.7
AUR62009425 Chenopodium quinoa HOM05D002688 ORTHO05D002911 1.5e-10 69.7 64 45.3
AUR62023104 Chenopodium quinoa HOM05D002688 ORTHO05D002911 1.9e-10 69.3 68 47.1
CARHR171300 Cardamine hirsuta HOM05D002688 ORTHO05D002911 7.2e-10 67.4 58 50.0
BcaB02g07393 Brassica carinata HOM05D002688 ORTHO05D002911 1.2e-09 66.6 58 50.0
HPP92_001357 Vanilla planifolia HOM05D002688 ORTHO05D002911 1.2e-09 66.6 56 50.0
SEGI_29949 Sequoiadendron giganteum HOM05D002688 ORTHO05D002911 2.1e-09 65.9 54 53.7
BcaC07g40610 Brassica carinata HOM05D002688 ORTHO05D002911 2.7e-09 65.5 56 48.2
C08p35850 Brassica napus HOM05D002688 ORTHO05D002911 2.7e-09 65.5 56 48.2
Ah.16g100690 Amaranthus hybridus HOM05D002688 ORTHO05D002911 6.1e-09 64.3 59 50.8
EL10Ac2g04381 Beta vulgaris HOM05D002688 ORTHO05D002911 6.1e-09 64.3 61 45.9
Zm00001eb329570 Zea mays HOM05D002688 ORTHO05D002911 6.7e-08 60.8 40 65.0
BcaC07g42648 Brassica carinata HOM05D002688 ORTHO05D002911 1.1e-07 60.1 55 41.8
Ah.09g235230 Amaranthus hybridus HOM05D002688 ORTHO05D002911 3.7e-06 55.1 47 48.9


User provided reference genes

Program Settings