Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035177 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D013703 1.9e-135 485.7 229 100.0
CSS0044733 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D013703 2.4e-130 468.8 229 96.5
CSS0029602 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D013703 3.9e-112 408.3 248 81.9
CSS0013417 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.5e-98 362.5 263 72.2
CSS0041416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.8e-96 356.3 255 73.3
Rhsim02G0041000 Rhododendron simsii HOM05D000218 ORTHO05D000125 4.8e-62 241.9 278 48.6
Sabra05G0155500 Salix brachista HOM05D000002 ORTHO05D000047 2.7e-52 209.5 265 43.4
SabraUnG0001600 Salix brachista HOM05D000002 ORTHO05D000047 3.5e-52 209.1 265 43.4
Sabra15G0064300 Salix brachista HOM05D000002 ORTHO05D000047 1.9e-50 203.4 265 42.6
CSS0025415 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-47 193.4 251 47.4
CSS0039612 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.7e-43 180.3 204 48.5
Rhsim02G0175900 Rhododendron simsii HOM05D000002 ORTHO05D013703 2.3e-43 179.9 173 56.6
Rhsim06G0131800 Rhododendron simsii HOM05D002632 ORTHO05D002881 7.5e-39 164.9 278 37.4
CSS0045327 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-38 164.1 258 41.5
CSS0009223 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D013703 2.1e-33 146.7 101 71.3
TPR.G17866 Trifolium pratense HOM05D000002 ORTHO05D013703 8.6e-27 124.8 221 34.8
Sabra17G0065400 Salix brachista HOM05D000002 ORTHO05D000047 2.0e-23 113.6 137 46.7
CSS0048149 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D013703 1.5e-18 97.4 67 71.6
CSS0007225 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.3e-18 96.3 67 70.1
Prupe.6G115900 Prunus persica HOM05D000002 ORTHO05D000047 1.2e-17 94.4 267 28.5
CSS0015624 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D013703 3.6e-17 92.8 66 68.2
CSS0034145 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D013703 3.6e-17 92.8 66 68.2
FvH4_1g25371 Fragaria vesca HOM05D000002 ORTHO05D000047 4.7e-17 92.4 264 26.1
Psat3g182040 Pisum sativum HOM05D000002 ORTHO05D000047 1.1e-16 91.3 196 30.1
Psat5g063200 Pisum sativum HOM05D000002 ORTHO05D000047 1.2e-15 87.8 237 27.0
Hma1.2p1_0253F.1_g102890 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.6e-15 86.7 249 28.5
FvH4_2g05413 Fragaria vesca HOM05D000002 ORTHO05D000047 7.6e-15 85.1 264 24.6
Prupe.1G090900 Prunus persica HOM05D000002 ORTHO05D000047 2.2e-14 83.6 199 28.1
SHI05828 Sapria himalayana HOM05D000002 ORTHO05D013703 6.4e-14 82.0 91 47.3
RhsimUnG0026700 Rhododendron simsii HOM05D000002 ORTHO05D013648 1.1e-13 81.3 43 74.4
FvH4_4g19782 Fragaria vesca HOM05D000002 ORTHO05D000047 2.4e-13 80.1 102 39.2
FvH4_1g19561 Fragaria vesca HOM05D000002 ORTHO05D000047 5.4e-13 79.0 102 39.2
Cpa.g.sc5.346 Carica papaya HOM05D000002 ORTHO05D000047 1.2e-12 77.8 279 24.4
Sabra16G0006500 Salix brachista HOM05D000002 ORTHO05D000047 1.2e-12 77.8 267 24.7
Sabra17G0026400 Salix brachista HOM05D000002 ORTHO05D000047 1.2e-12 77.8 267 24.7
TWI23G0973 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 1.2e-12 77.8 291 24.4
CSS0001169 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.6e-12 77.4 286 23.8
CSS0014458 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-12 77.4 238 26.5
FvH4_4g33444 Fragaria vesca HOM05D000002 ORTHO05D000047 1.6e-12 77.4 102 38.2
Sabra05G0049300 Salix brachista HOM05D000002 ORTHO05D000047 1.6e-12 77.4 262 24.8
Sabra10G0054700 Salix brachista HOM05D000002 ORTHO05D000047 1.6e-12 77.4 262 23.7
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.6e-12 77.4 267 24.7
Sabra18G0042000 Salix brachista HOM05D000002 ORTHO05D000047 1.6e-12 77.4 262 24.8
Sabra04G0151400 Salix brachista HOM05D000002 ORTHO05D000047 2.1e-12 77.0 262 23.7
AUR62032213 Chenopodium quinoa HOM05D001471 ORTHO05D000001 2.7e-12 76.6 212 25.9
AUR62030950 Chenopodium quinoa HOM05D000002 ORTHO05D000001 3.5e-12 76.3 216 25.5
SHI19789 Sapria himalayana HOM05D000002 ORTHO05D000047 4.6e-12 75.9 61 57.4
CSS0049957 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.0e-12 75.5 241 29.0
Hma1.2p1_0359F.1_g135490 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 6.0e-12 75.5 234 24.8
Prupe.1G465400 Prunus persica HOM05D000002 ORTHO05D000047 1.3e-11 74.3 93 40.9
Hma1.2p1_0158F.1_g069853 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.7e-11 73.9 108 31.5
Prupe.4G181800 Prunus persica HOM05D000002 ORTHO05D000047 1.7e-11 73.9 144 31.9
Cpa.g.sc24.57 Carica papaya HOM05D000002 ORTHO05D000047 3.0e-11 73.2 241 23.7
Hma1.2p1_0111F.1_g053730 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.0e-11 73.2 101 32.7
Hma1.2p1_0308F.1_g120101 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.0e-11 73.2 101 32.7
Psat0s1566g0160 Pisum sativum HOM05D000002 ORTHO05D000047 3.0e-11 73.2 265 24.9
Sabra16G0096900 Salix brachista HOM05D000046 ORTHO05D000047 3.9e-11 72.8 265 23.8
FvH4_5g32571 Fragaria vesca HOM05D000002 ORTHO05D000047 5.1e-11 72.4 114 31.6
Hma1.2p1_0471F.1_g159500 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 5.1e-11 72.4 195 26.7
Prupe.6G327500 Prunus persica HOM05D000002 ORTHO05D000047 6.6e-11 72.0 158 29.1
TWI38G0937 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 6.6e-11 72.0 223 23.3
Psat6g204680 Pisum sativum HOM05D000002 ORTHO05D000047 1.1e-10 71.2 238 26.1
Sabra04G0039600 Salix brachista HOM05D000002 ORTHO05D000047 1.1e-10 71.2 181 28.2
Atru.chr6.370 Acer truncatum HOM05D000002 ORTHO05D000047 1.5e-10 70.9 97 35.1
Cpa.g.sc159.30 Carica papaya HOM05D000002 ORTHO05D000047 1.5e-10 70.9 125 30.4
FvH4_2g08961 Fragaria vesca HOM05D000002 ORTHO05D000047 1.5e-10 70.9 102 36.3
FvH4_4g33921 Fragaria vesca HOM05D000002 ORTHO05D000047 1.5e-10 70.9 114 30.7
Psat0s974g0040 Pisum sativum HOM05D000002 ORTHO05D000047 1.5e-10 70.9 226 25.7
Prupe.3G076700 Prunus persica HOM05D000002 ORTHO05D000047 1.5e-10 70.9 169 29.0
Rhsim11G0163200 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.5e-10 70.9 244 24.6
Hma1.2p1_0901F.1_g234740 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.5e-10 70.1 101 31.7
Psat7g053200 Pisum sativum HOM05D000002 ORTHO05D000047 2.5e-10 70.1 195 28.2
CSS0019500 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.3e-10 69.7 106 33.0
CSS0034457 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.3e-10 69.7 106 33.0
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 3.3e-10 69.7 228 23.7
Lj1g0019835 Lotus japonicus HOM05D000002 ORTHO05D000047 3.3e-10 69.7 127 32.3
Sabra11G0110600 Salix brachista HOM05D000002 ORTHO05D000047 4.3e-10 69.3 241 23.7
Manes.07G072514 Manihot esculenta HOM05D000002 ORTHO05D000047 5.6e-10 68.9 236 26.7
Cpa.g.sc159.7 Carica papaya HOM05D000002 ORTHO05D000047 7.3e-10 68.6 208 25.0
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 7.3e-10 68.6 109 35.8
RcHm_v2.0_Chr3g0450981 Rosa chinensis HOM05D000002 ORTHO05D000047 7.3e-10 68.6 119 30.3
CSS0036528 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.6e-10 68.2 106 32.1
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.6e-10 68.2 106 33.0
SEGI_08695 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 9.6e-10 68.2 222 24.8
Hma1.2p1_0232F.1_g097650 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.3e-09 67.8 261 21.8
Hma1.2p1_0668F.1_g199811 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.6e-09 67.4 105 32.4
AUR62031157 Chenopodium quinoa HOM05D000287 ORTHO05D000001 2.1e-09 67.0 235 22.1
CSS0000940 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0004057 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0009499 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0013318 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0013767 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-09 66.6 192 29.7
CSS0017533 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0020187 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0021109 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0027844 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
CSS0045746 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.8e-09 66.6 106 32.1
Cpa.g.sc344.1 Carica papaya HOM05D000002 ORTHO05D000047 2.8e-09 66.6 185 28.6
Cpa.g.sc96.44 Carica papaya HOM05D000002 ORTHO05D000047 2.8e-09 66.6 125 29.6
Hma1.2p1_0292F.1_g115520 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.8e-09 66.6 223 25.1
Lj1g0008265 Lotus japonicus HOM05D000002 ORTHO05D000047 2.8e-09 66.6 100 32.0
Lj3g0020805 Lotus japonicus HOM05D000002 ORTHO05D000047 2.8e-09 66.6 100 32.0
Atru.chr2.1700 Acer truncatum HOM05D000002 ORTHO05D000047 3.6e-09 66.2 124 33.1
Oeu050509.1 Olea europaea HOM05D000002 ORTHO05D000047 3.6e-09 66.2 110 31.8
Duzib151G0310 Durio zibethinus HOM05D000002 ORTHO05D000047 8.1e-09 65.1 94 34.0
Sopen05g019470 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-09 65.1 193 25.9
Oeu029282.1 Olea europaea HOM05D000002 ORTHO05D000047 1.1e-08 64.7 113 29.2
Prupe.1G241200 Prunus persica HOM05D000002 ORTHO05D000047 1.1e-08 64.7 111 34.2
CSS0012133 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.4e-08 64.3 106 31.1
Sabra04G0106200 Salix brachista HOM05D000002 ORTHO05D000047 1.4e-08 64.3 172 27.3
Oeu025453.1 Olea europaea HOM05D000002 ORTHO05D000047 1.8e-08 63.9 132 28.8
Cpa.g.sc25.135 Carica papaya HOM05D000002 ORTHO05D000047 2.4e-08 63.5 103 30.1
Cpa.g.sc54.39 Carica papaya HOM05D000002 ORTHO05D000047 2.4e-08 63.5 103 32.0
Manes.02G195350 Manihot esculenta HOM05D000002 ORTHO05D000047 3.1e-08 63.2 142 31.0
Manes.15G179768 Manihot esculenta HOM05D000002 ORTHO05D000047 3.1e-08 63.2 230 23.5
Hma1.2p1_0004F.1_g004100 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 4.0e-08 62.8 100 32.0
Rhsim01G0079100 Rhododendron simsii HOM05D000002 ORTHO05D000047 4.0e-08 62.8 208 25.0
TWI60G0096 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 4.0e-08 62.8 135 30.4
TWI63G0021 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 4.0e-08 62.8 135 30.4
AUR62010632 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.3e-08 62.4 288 20.1
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 5.3e-08 62.4 94 33.0
Duzib187G0946 Durio zibethinus HOM05D000002 ORTHO05D000047 5.3e-08 62.4 94 33.0
Atru.chr2.1876 Acer truncatum HOM05D000002 ORTHO05D000047 6.9e-08 62.0 127 29.1
CSS0021536 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.9e-08 62.0 94 33.0
CSS0036738 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 6.9e-08 62.0 94 33.0
Cpa.g.sc28.127 Carica papaya HOM05D000002 ORTHO05D000047 6.9e-08 62.0 103 31.1
CSS0022161 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 9.0e-08 61.6 218 24.8
Duzib168G2283 Durio zibethinus HOM05D000002 ORTHO05D000047 9.0e-08 61.6 94 33.0
Hma1.2p1_0722F.1_g208760 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 9.0e-08 61.6 156 26.3
Hma1.2p1_0812F.1_g222220 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 9.0e-08 61.6 100 31.0
Hma1.2p1_1043F.1_g251210 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 9.0e-08 61.6 200 24.5
Manes.15G178633 Manihot esculenta HOM05D000002 ORTHO05D000047 9.0e-08 61.6 184 26.1
Psat1g039640 Pisum sativum HOM05D000002 ORTHO05D000047 9.0e-08 61.6 214 22.4
Sopen07g020000 Solanum pennellii HOM05D000002 ORTHO05D000047 9.0e-08 61.6 212 25.0
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 9.0e-08 61.6 270 20.4
Cpa.g.sc3.387 Carica papaya HOM05D000002 ORTHO05D000047 1.2e-07 61.2 114 29.8
RcHm_v2.0_Chr1g0341931 Rosa chinensis HOM05D000002 ORTHO05D000047 1.2e-07 61.2 238 23.1
SHI16355 Sapria himalayana HOM05D000002 ORTHO05D013703 1.2e-07 61.2 41 68.3
SHI54535 Sapria himalayana HOM05D000002 ORTHO05D013703 1.2e-07 61.2 41 68.3
Cpa.g.sc97.54 Carica papaya HOM05D000002 ORTHO05D000047 1.5e-07 60.8 103 30.1
Duzib063G0004 Durio zibethinus HOM05D000002 ORTHO05D000047 1.5e-07 60.8 94 31.9
Thecc.07G159000 Theobroma cacao HOM05D000002 ORTHO05D000047 1.5e-07 60.8 202 22.8
Cpa.g.sc608.3 Carica papaya HOM05D000002 ORTHO05D000047 2.0e-07 60.5 103 31.1
Hma1.2p1_0210F.1_g089480 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.0e-07 60.5 100 30.0
Manes.16G040701 Manihot esculenta HOM05D000002 ORTHO05D000047 2.0e-07 60.5 123 33.3
Sopen05g021800 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-07 60.5 212 21.2
Cpa.g.sc15.71 Carica papaya HOM05D000002 ORTHO05D000047 2.6e-07 60.1 94 33.0
Cpa.g.sc7.142 Carica papaya HOM05D000002 ORTHO05D000047 2.6e-07 60.1 103 31.1
ClCG01G009970 Citrullus lanatus HOM05D011088 ORTHO05D000047 2.6e-07 60.1 116 31.9
SHI06863 Sapria himalayana HOM05D000002 ORTHO05D013703 2.6e-07 60.1 72 43.1
Ah.05g172990 Amaranthus hybridus HOM05D064429 ORTHO05D000047 3.4e-07 59.7 187 23.5
Hma1.2p1_0053F.1_g030910 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 4.4e-07 59.3 98 31.6
FvH4_1g25961 Fragaria vesca HOM05D000002 ORTHO05D000047 5.8e-07 58.9 82 31.7
Hma1.2p1_0495F.1_g165770 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 5.8e-07 58.9 187 23.0
Peaxi162Scf00684g00410 Petunia axillaris HOM05D000002 ORTHO05D000047 5.8e-07 58.9 243 21.8
RcHm_v2.0_Chr3g0453341 Rosa chinensis HOM05D000002 ORTHO05D000047 5.8e-07 58.9 283 23.3
TAR332G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.8e-07 58.9 106 30.2
Cpa.g.sc110.7 Carica papaya HOM05D000002 ORTHO05D000047 7.6e-07 58.5 103 31.1
Sabra15G0125600 Salix brachista HOM05D000002 ORTHO05D000047 7.6e-07 58.5 180 23.3
SHI40782 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-06 57.8 96 31.2
GSVIVG01029816001 Vitis vinifera HOM05D000168 ORTHO05D000047 1.3e-06 57.8 103 27.2
Cpa.g.sc58.26 Carica papaya HOM05D000002 ORTHO05D000047 1.7e-06 57.4 221 24.4
Cpa.g.sc140.18 Carica papaya HOM05D000002 ORTHO05D000047 2.2e-06 57.0 184 24.5
Ca_11532_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000047 2.2e-06 57.0 156 24.4
Thecc.05G205900 Theobroma cacao HOM05D000002 ORTHO05D000047 2.2e-06 57.0 135 24.4
Cpa.g.sc39.94 Carica papaya HOM05D000002 ORTHO05D000047 2.9e-06 56.6 182 28.6
Cpa.g.sc697.1 Carica papaya HOM05D000002 ORTHO05D000047 2.9e-06 56.6 120 30.8
Hma1.2p1_0281F.1_g113200 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.9e-06 56.6 92 34.8
SHI36897 Sapria himalayana HOM05D000002 ORTHO05D004756 2.9e-06 56.6 109 28.4
Atru.chr11.3 Acer truncatum HOM05D000002 ORTHO05D000047 3.8e-06 56.2 99 31.3
Cpa.g.sc180.7 Carica papaya HOM05D000002 ORTHO05D000047 3.8e-06 56.2 268 21.6
Cpa.g.sc32.91 Carica papaya HOM05D000002 ORTHO05D000047 3.8e-06 56.2 151 27.2
Eucgr.C01993 Eucalyptus grandis HOM05D000002 ORTHO05D000047 3.8e-06 56.2 94 29.8
Hma1.2p1_0033F.1_g020960 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.8e-06 56.2 144 27.1
Sabra06G0157700 Salix brachista HOM05D000002 ORTHO05D000047 3.8e-06 56.2 140 25.7
Manes.10G096950 Manihot esculenta HOM05D000002 ORTHO05D000047 4.9e-06 55.8 115 27.0
PSO782G4628 Papaver somniferum HOM05D000002 ORTHO05D000001 4.9e-06 55.8 114 27.2
Aqoxy7G01998 Aquilegia oxysepala HOM05D000002 ORTHO05D000047 6.4e-06 55.5 100 34.0
ClCG10G009560 Citrullus lanatus HOM05D000002 ORTHO05D000001 6.4e-06 55.5 126 28.6
Eucgr.B01039 Eucalyptus grandis HOM05D000002 ORTHO05D000047 6.4e-06 55.5 136 25.0
SHI03432 Sapria himalayana HOM05D007230 ORTHO05D004756 8.4e-06 55.1 106 28.3
SHI39742 Sapria himalayana HOM05D000002 ORTHO05D000001 8.4e-06 55.1 106 28.3


User provided reference genes

Program Settings