Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 0.0e+00 1211.1 634 100.0
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 0.0e+00 1196.4 661 95.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.1e-277 958.7 667 78.1
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 9.3e-273 943.3 667 76.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 8.7e-271 936.8 663 77.2
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 3.3e-262 908.3 652 75.8
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.4e-260 902.1 663 73.5
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.8e-244 849.4 664 68.1
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.1e-241 840.1 669 66.1
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.2e-241 838.2 624 71.3
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 7.5e-238 827.4 654 67.6
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.8e-237 825.5 680 66.8
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.1e-236 822.0 658 66.9
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 5.3e-236 821.2 653 67.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.6e-235 819.7 652 67.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.0e-235 819.3 656 67.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.0e-235 819.3 652 67.0
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 4.2e-233 811.6 654 67.3
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.7e-232 808.9 650 66.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.6e-232 808.5 659 66.8
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.4e-231 806.6 653 66.9
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.6e-230 802.4 652 65.3
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 2.2e-229 799.3 646 67.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.2e-229 799.3 655 65.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.8e-229 798.9 649 66.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 3.7e-229 798.5 656 65.9
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.4e-228 796.6 698 62.5
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.8e-228 796.2 701 61.8
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 7.0e-228 794.3 656 65.7
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.2e-227 793.5 667 65.2
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.0e-226 790.4 646 66.6
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.0e-226 788.1 676 65.2
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.5e-225 786.6 658 65.0
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 7.2e-225 784.3 664 64.5
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.7e-224 781.6 655 63.8
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.8e-223 779.6 677 64.5
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 2.3e-223 779.2 660 63.8
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.0e-222 776.2 640 66.1
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-222 775.8 632 66.5
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 2.6e-222 775.8 649 65.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 7.5e-222 774.2 713 62.4
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.7e-221 773.1 667 64.3
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.2e-221 772.7 661 62.8
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 3.7e-221 771.9 661 62.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.4e-220 769.2 673 62.6
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 2.0e-219 766.1 656 63.4
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.5e-219 765.0 655 62.9
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.3e-218 763.5 661 64.0
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.3e-218 762.7 652 62.7
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.3e-218 762.7 660 64.4
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 2.9e-218 762.3 674 62.9
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 3.9e-218 761.9 650 63.1
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 2.5e-217 759.2 652 62.1
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 7.3e-217 757.7 652 62.7
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.3e-217 757.7 632 65.7
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 9.5e-217 757.3 650 62.8
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-216 755.7 652 62.6
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 3.6e-216 755.4 652 62.1
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 4.7e-216 755.0 658 62.2
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.5e-214 750.0 661 62.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 3.4e-214 748.8 645 63.4
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 9.8e-214 747.3 652 61.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 2.2e-213 746.1 649 61.5
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.2e-213 746.1 649 61.2
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 6.4e-213 744.6 659 61.6
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 7.0e-212 741.1 646 61.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.6e-211 740.0 658 61.1
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.0e-211 739.6 653 60.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.3e-210 736.1 662 60.7
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 6.6e-210 734.6 635 62.5
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.9e-209 733.0 658 59.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.5e-209 732.6 651 59.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 4.3e-209 731.9 657 59.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.6e-208 729.9 649 59.8
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-208 729.9 657 59.4
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.8e-208 729.2 661 60.1
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 3.6e-208 728.8 651 59.1
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.4e-207 726.9 649 59.9
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.4e-207 726.9 649 60.1
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.4e-207 726.9 649 59.6
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 8.9e-207 724.2 649 59.8
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 8.9e-207 724.2 649 59.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.4e-204 716.8 682 57.3
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 3.2e-204 715.7 651 59.0
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 6.0e-203 711.4 625 62.2
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-202 709.9 587 63.7
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.1e-201 707.2 646 59.6
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.1e-201 707.2 654 58.1
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-201 706.4 683 59.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 5.6e-201 704.9 639 59.5
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 7.3e-201 704.5 639 59.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.5e-198 696.8 541 68.4
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 3.4e-198 695.7 537 68.2
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.2e-197 693.0 652 58.9
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 2.4e-196 689.5 652 60.1
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-195 686.8 662 58.2
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 4.6e-195 685.3 554 67.5
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.3e-194 683.7 658 55.8
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 3.0e-194 682.6 573 66.0
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.4e-183 646.4 538 66.5
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 4.0e-183 645.6 559 64.2
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.1e-180 637.5 657 56.9
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 4.8e-176 622.1 661 54.2
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.2e-174 617.5 537 61.1
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 5.8e-174 615.1 516 64.1
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.4e-167 594.0 530 59.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.3e-165 587.4 646 50.6
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 4.9e-165 585.5 659 49.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 8.2e-160 568.2 656 48.3
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.5e-155 552.7 660 48.0
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.9e-149 533.1 398 70.9
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 4.6e-147 525.8 397 73.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.8e-143 513.8 654 45.9
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.2e-133 480.3 655 44.4
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 3.8e-133 479.6 653 45.3
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.0e-133 479.2 655 44.3
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.1e-132 478.0 431 60.6
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 4.7e-131 472.6 635 44.6
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 3.1e-127 459.9 658 41.3
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 8.0e-115 418.7 373 60.1
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-87 328.2 250 70.4
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.0e-77 293.9 296 55.7
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 5.6e-76 289.7 611 35.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 6.8e-74 282.7 412 42.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 9.9e-73 278.9 218 66.5
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.3e-72 278.5 438 41.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.7e-70 270.8 213 69.5
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.2e-62 245.4 366 44.5
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 2.6e-57 227.6 202 63.4
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 5.5e-55 219.9 281 47.3
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-51 208.4 306 45.1
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.1e-51 208.0 236 54.7
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.8e-50 204.9 244 48.4
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 3.4e-49 200.7 612 31.0
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-47 194.1 201 54.7
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 7.4e-36 156.4 107 73.8
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.8e-35 154.5 229 43.2
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.2e-35 152.9 119 72.3
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.2e-32 144.8 621 26.1
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-31 142.5 186 46.8
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-31 141.0 105 67.6
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 5.5e-31 140.2 97 67.0
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 4.6e-30 137.1 175 44.6
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.8e-18 98.6 75 68.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 3.5e-17 94.4 68 66.2
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-13 82.0 101 49.5
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.3e-13 81.6 71 56.3
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-12 78.6 106 47.2
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.5e-12 76.6 104 47.1
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-11 74.7 67 59.7
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 8.2e-11 73.2 68 50.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 3.1e-10 71.2 113 43.4
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.1e-10 71.2 64 56.2
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 9.1e-10 69.7 52 63.5
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.7e-09 68.2 74 51.4
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 3.5e-09 67.8 68 47.1
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 4.5e-09 67.4 47 70.2
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.0e-08 66.2 161 29.8
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.7e-08 65.5 50 62.0
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 8.5e-08 63.2 94 46.8


User provided reference genes

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