Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 6.6e-179 630.6 313 100.0
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 2.5e-146 522.3 312 82.1
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 2.1e-132 476.1 299 75.6
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 6.9e-128 461.1 312 67.9
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 1.2e-127 460.3 306 70.3
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 7.2e-125 451.1 303 69.3
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 9.4e-125 450.7 306 69.3
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 5.1e-123 444.9 304 69.7
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 9.7e-122 440.7 312 68.3
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 9.7e-122 440.7 292 69.2
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 1.7e-121 439.9 312 67.9
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 4.8e-121 438.3 307 66.8
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 1.2e-119 433.7 449 54.8
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.5e-119 433.3 307 66.1
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 2.0e-119 433.0 306 65.4
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 5.9e-119 431.4 295 67.1
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 2.9e-118 429.1 312 63.8
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 5.0e-118 428.3 301 66.4
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 1.9e-117 426.4 306 64.1
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 4.2e-117 425.2 306 64.4
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 7.2e-117 424.5 307 64.2
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 1.2e-116 423.7 304 66.8
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 1.2e-116 423.7 306 65.7
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 6.1e-116 421.4 310 64.2
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 8.8e-115 417.5 291 63.6
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 1.1e-114 417.2 295 67.1
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 4.4e-114 415.2 299 62.5
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 7.4e-114 414.5 305 64.9
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 9.7e-114 414.1 299 65.6
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 2.8e-113 412.5 287 67.6
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 2.8e-113 412.5 306 63.7
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 6.3e-113 411.4 306 65.7
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 8.2e-113 411.0 299 61.9
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 3.1e-112 409.1 311 63.3
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.6e-111 406.8 302 63.2
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 3.5e-111 405.6 306 63.1
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.7e-110 403.3 295 64.1
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 2.2e-110 402.9 299 60.2
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 2.9e-110 402.5 294 65.3
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 6.5e-110 401.4 295 63.4
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 8.5e-110 401.0 295 62.7
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 9.4e-109 397.5 295 62.4
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 2.1e-108 396.4 306 60.8
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 2.1e-108 396.4 295 63.1
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 3.6e-108 395.6 295 63.1
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 6.1e-108 394.8 289 63.0
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.1e-108 394.8 295 62.7
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.1e-108 394.8 295 63.1
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 1.0e-107 394.0 288 63.5
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.4e-107 393.7 294 62.6
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.8e-107 393.3 307 61.9
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 5.2e-107 391.7 288 63.5
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 8.8e-107 391.0 295 61.4
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 1.2e-106 390.6 295 62.4
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 1.2e-106 390.6 289 64.0
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 1.5e-106 390.2 280 63.9
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 9.7e-106 387.5 280 64.3
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 2.2e-105 386.3 291 62.2
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 2.2e-105 386.3 291 61.9
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 2.4e-104 382.9 306 58.5
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 4.5e-103 378.6 321 58.3
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 5.0e-102 375.2 299 59.5
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 1.9e-101 373.2 281 61.9
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 1.2e-100 370.5 300 61.0
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 2.1e-100 369.8 298 55.7
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 1.0e-99 367.5 278 62.2
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 6.8e-99 364.8 306 56.5
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 6.8e-99 364.8 296 59.1
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 2.0e-98 363.2 266 63.2
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 2.8e-97 359.4 298 56.0
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 6.3e-97 358.2 294 56.5
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.1e-96 355.5 387 47.8
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 5.4e-96 355.1 306 56.9
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 9.1e-96 354.4 258 61.6
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 1.7e-94 350.1 265 61.9
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 2.9e-94 349.4 354 53.1
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 3.3e-93 345.9 283 58.3
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.8e-89 332.8 251 62.2
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 1.1e-88 330.9 306 53.6
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 9.2e-88 327.8 234 64.1
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 7.8e-87 324.7 235 65.1
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 6.6e-86 321.6 233 64.8
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.1e-85 320.9 202 76.2
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 9.5e-85 317.8 234 61.5
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 3.6e-84 315.8 231 65.8
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.5e-82 310.5 247 59.9
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 1.4e-80 303.9 298 45.6
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 1.5e-77 293.9 309 50.2
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 1.2e-76 290.8 349 47.0
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.1e-75 287.7 208 65.4
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 1.2e-71 274.2 209 61.7
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.6e-71 273.9 281 46.3
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 5.8e-66 255.4 308 42.2
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 1.3e-62 244.2 415 41.0
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 9.2e-56 221.5 192 56.2
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 2.1e-55 220.3 279 43.7
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 2.3e-54 216.9 192 55.7
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 3.3e-53 213.0 173 57.2
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 2.1e-52 210.3 313 38.0
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 2.6e-50 203.4 304 38.2
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 1.1e-48 198.0 143 62.9
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 2.4e-48 196.8 152 60.5
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 7.1e-48 195.3 159 58.5
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 2.1e-47 193.7 306 36.6
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 5.3e-43 179.1 126 65.1
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 1.0e-38 164.9 122 61.5
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 3.3e-37 159.8 138 64.5
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 2.8e-36 156.8 101 66.3
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 1.5e-29 134.4 98 59.2
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 7.4e-29 132.1 95 61.1
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 6.2e-28 129.0 82 65.9
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 1.7e-25 120.9 334 28.7
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 4.9e-25 119.4 258 30.2
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.9e-24 117.5 85 58.8
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 7.9e-23 112.1 73 65.8
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 5.7e-21 105.9 290 28.3
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 1.9e-16 90.9 61 63.9
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 6.5e-09 65.9 47 66.0
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 5.5e-08 62.8 54 55.6
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 5.5e-08 62.8 40 67.5
Hund19874 Selenicereus undatus HOM05D006689 ORTHO05D008349 1.4e-06 58.2 40 62.5
arahy.Tifrunner.gnm1.ann1.HW4B1R Arachis hypogaea HOM05D006689 ORTHO05D008349 3.9e-06 56.6 52 51.9
Ca_12392_v3 Cicer arietinum L. HOM05D000112 ORTHO05D023238 6.7e-06 55.8 49 55.1


User provided reference genes

Program Settings