Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035154 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D015017 6.0e-59 230.7 124 100.0
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 3.9e-34 148.3 124 66.1
Dinv09475 Davidia involucrata HOM05D000240 ORTHO05D015017 6.3e-32 141.0 119 63.9
vmacro05230 Vaccinium macrocarpon HOM05D000240 ORTHO05D015017 1.2e-30 136.7 124 65.3
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 2.0e-30 136.0 124 63.7
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 4.5e-30 134.8 120 64.2
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 1.1e-28 130.2 124 59.7
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 2.3e-26 122.5 124 54.0
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 5.2e-26 121.3 118 59.3
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 8.8e-26 120.6 123 53.7
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 2.0e-25 119.4 101 63.4
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 2.0e-25 119.4 99 65.7
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 2.6e-25 119.0 114 58.8
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 2.6e-25 119.0 121 56.2
Ciclev10005818m.g Citrus clementina HOM05D000240 ORTHO05D015017 4.4e-25 118.2 124 55.6
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 4.4e-25 118.2 124 54.0
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 9.7e-25 117.1 126 56.3
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 9.7e-25 117.1 121 53.7
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 1.1e-23 113.6 121 52.9
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 3.1e-23 112.1 123 52.0
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 4.1e-23 111.7 126 54.0
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 4.1e-23 111.7 97 64.9
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 5.3e-23 111.3 121 54.5
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 5.3e-23 111.3 123 54.5
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 1.2e-22 110.2 121 50.4
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 1.6e-22 109.8 119 51.3
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 1.6e-22 109.8 123 52.0
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 2.7e-22 109.0 121 54.5
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 4.5e-22 108.2 107 59.8
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 7.7e-22 107.5 119 53.8
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 7.7e-22 107.5 100 60.0
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 7.7e-22 107.5 100 60.0
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 1.7e-21 106.3 100 62.0
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 2.9e-21 105.5 101 58.4
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 3.8e-21 105.1 117 49.6
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 6.5e-21 104.4 93 61.3
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 6.5e-21 104.4 124 50.8
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.1e-20 103.6 121 50.4
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 1.2e-19 100.1 122 46.7
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.2e-19 100.1 121 48.8
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 4.7e-19 98.2 119 52.9
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 4.7e-19 98.2 98 56.1
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 4.7e-19 98.2 117 50.4
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 6.1e-19 97.8 119 52.1
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 1.0e-18 97.1 117 47.9
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 3.0e-18 95.5 119 51.3
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 6.8e-18 94.4 95 57.9
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 6.8e-18 94.4 121 46.3
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 8.8e-18 94.0 121 43.8
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 8.8e-18 94.0 102 52.0
VMungo0647G0327 Vigna mungo HOM05D000240 ORTHO05D015017 8.8e-18 94.0 119 47.9
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 1.2e-17 93.6 100 54.0
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 1.5e-17 93.2 119 50.4
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 4.4e-17 91.7 124 47.6
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 9.8e-17 90.5 122 46.7
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 1.3e-16 90.1 117 49.6
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 1.7e-16 89.7 94 54.3
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 2.2e-16 89.4 100 52.0
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 2.2e-16 89.4 103 50.5
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 4.8e-16 88.2 100 52.0
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.1e-15 87.0 98 52.0
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 1.1e-15 87.0 98 52.0
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 1.8e-15 86.3 92 51.1
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 3.1e-15 85.5 97 52.6
COL.COLO4_07160 Corchorus olitorius HOM05D000240 ORTHO05D015017 4.1e-15 85.1 66 69.7
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 7.0e-15 84.3 80 56.2
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 7.0e-15 84.3 98 46.9
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 9.1e-15 84.0 93 53.8
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 9.1e-15 84.0 137 44.5
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 3.5e-14 82.0 94 47.9
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 4.5e-14 81.6 124 42.7
Lsat_1_v5_gn_7_4320 Lactuca sativa HOM05D000240 ORTHO05D015017 5.9e-14 81.3 95 48.4
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 1.0e-13 80.5 96 51.0
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.0e-13 80.5 92 53.3
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 2.2e-13 79.3 64 67.2
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 2.9e-13 79.0 110 44.5
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 2.9e-13 79.0 119 43.7
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 3.8e-13 78.6 115 47.0
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 8.5e-13 77.4 90 51.1
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 1.5e-12 76.6 96 50.0
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 1.9e-12 76.3 64 64.1
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 3.2e-12 75.5 112 46.4
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 7.2e-12 74.3 87 52.9
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 9.4e-12 73.9 121 38.8
Os09g0421166 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D015017 9.4e-12 73.9 96 42.7
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 4.7e-11 71.6 134 38.1
Hma1.2p1_0595F.1_g186120 Hydrangea macrophylla HOM05D000240 ORTHO05D015017 4.7e-11 71.6 99 50.5
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 6.8e-10 67.8 79 45.6
CDE05G3239 Ceratophyllum demersum HOM05D000240 ORTHO05D015017 2.6e-09 65.9 110 36.4
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 7.5e-09 64.3 96 44.8
unitig_21.g20920 Utricularia gibba HOM05D000240 ORTHO05D002608 9.8e-09 63.9 64 53.1
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 7.0e-07 57.8 60 48.3
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 2.0e-06 56.2 61 49.2
SEGI_37658 Sequoiadendron giganteum HOM05D000240 ORTHO05D015017 5.9e-06 54.7 65 47.7


User provided reference genes

Program Settings