Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035141 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D043368 1.2e-71 273.5 183 100.0
CSS0037056 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 2.4e-35 152.9 85 100.0
CSS0048299 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 2.4e-35 152.9 85 100.0
CSS0015734 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 9.0e-35 151.0 84 100.0
Rhsim05G0146600 Rhododendron simsii HOM05D000604 ORTHO05D004512 5.1e-22 108.6 81 76.5
vmacro19657 Vaccinium macrocarpon HOM05D000604 ORTHO05D004512 5.6e-21 105.1 73 82.2
TAR362G0854 Trochodendron aralioides HOM05D000604 ORTHO05D004512 9.6e-21 104.4 85 71.8
Dinv01785 Davidia involucrata HOM05D000604 ORTHO05D004512 4.8e-20 102.1 82 72.0
Hma1.2p1_0071F.1_g037955 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 3.8e-17 92.4 79 67.1
TWI38G0373 Tripterygium wilfordii HOM05D000604 ORTHO05D004512 8.4e-17 91.3 96 61.5
TAR633G1789 Trochodendron aralioides HOM05D000604 ORTHO05D004512 3.2e-16 89.4 80 67.5
TAR633G2382 Trochodendron aralioides HOM05D000604 ORTHO05D004512 9.3e-16 87.8 80 66.2
Atru.chr12.650 Acer truncatum HOM05D000604 ORTHO05D004512 2.1e-15 86.7 85 56.5
Atru.chr12.677 Acer truncatum HOM05D000604 ORTHO05D004512 2.1e-15 86.7 85 56.5
Hma1.2p1_0702F.1_g206100 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 1.3e-14 84.0 86 61.6
Hund07022 Selenicereus undatus HOM05D000604 ORTHO05D004512 2.5e-13 79.7 87 50.6
Aqoxy3G00886 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 5.7e-13 78.6 84 54.8
Nn4g26073 Nelumbo nucifera HOM05D000604 ORTHO05D004512 2.8e-12 76.3 84 54.8
GSVIVG01020870001 Vitis vinifera HOM05D000604 ORTHO05D004512 4.8e-12 75.5 86 55.8
Nn3g21243 Nelumbo nucifera HOM05D000604 ORTHO05D004512 1.1e-11 74.3 84 56.0
Actinidia28390 Actinidia chinensis HOM05D000604 ORTHO05D004512 1.4e-11 73.9 76 60.5
Glyma.10G158100 Glycine max HOM05D000604 ORTHO05D004512 1.8e-11 73.6 88 44.3
ClCG03G016990 Citrullus lanatus HOM05D000604 ORTHO05D004512 5.3e-11 72.0 86 57.0
Cc02_g32830 Coffea canephora HOM05D000604 ORTHO05D004512 5.3e-11 72.0 84 52.4
Medtr5g010140 Medicago truncatula HOM05D000604 ORTHO05D004512 1.2e-10 70.9 91 45.1
Phvul.007G183500 Phaseolus vulgaris HOM05D000604 ORTHO05D004512 1.2e-10 70.9 91 45.1
Potri.008G043600 Populus trichocarpa HOM05D000604 ORTHO05D004512 1.2e-10 70.9 76 56.6
Thecc.10G069000 Theobroma cacao HOM05D000604 ORTHO05D004512 1.2e-10 70.9 114 43.9
Oeu026653.1 Olea europaea HOM05D000604 ORTHO05D004512 2.0e-10 70.1 86 52.3
MBI18_g38867_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004512 4.5e-10 68.9 83 57.8
VMungo0720G1625 Vigna mungo HOM05D000604 ORTHO05D004512 2.2e-09 66.6 78 47.4
Duzib128G0428 Durio zibethinus HOM05D000604 ORTHO05D004512 3.8e-09 65.9 84 48.8
COL.COLO4_23726 Corchorus olitorius HOM05D000604 ORTHO05D004512 5.0e-09 65.5 154 39.6
Lalb_Chr21g0310821 Lupinus albus HOM05D000604 ORTHO05D004512 5.0e-09 65.5 91 45.1
Manes.08G028200 Manihot esculenta HOM05D000604 ORTHO05D004512 5.0e-09 65.5 72 55.6
Sabra08G0030100 Salix brachista HOM05D000604 ORTHO05D004512 6.5e-09 65.1 75 53.3
Aqoxy1G02180 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 8.5e-09 64.7 84 50.0
CsaV3_1G038950 Cucumis sativus L. HOM05D000604 ORTHO05D004512 1.1e-08 64.3 85 55.3
MD04G1213300 Malus domestica HOM05D000604 ORTHO05D004512 1.1e-08 64.3 76 52.6
TWI63G0077 Tripterygium wilfordii HOM05D000604 ORTHO05D043368 1.1e-08 64.3 58 60.3
Oeu052139.1 Olea europaea HOM05D000604 ORTHO05D004512 1.4e-08 63.9 84 46.4
Lj3g0003298 Lotus japonicus HOM05D000604 ORTHO05D004512 1.9e-08 63.5 91 45.1
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 2.5e-08 63.2 85 54.1
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 2.5e-08 63.2 68 47.1
QL07p023602 Quercus lobata HOM05D000604 ORTHO05D004512 2.5e-08 63.2 89 43.8
Sc16g0008250 Simmondsia chinensis HOM05D000604 ORTHO05D004512 2.5e-08 63.2 81 51.9
Ciclev10031535m.g Citrus clementina HOM05D000604 ORTHO05D004512 4.2e-08 62.4 75 54.7
Sed0027198 Sechium edule HOM05D000604 ORTHO05D004512 4.2e-08 62.4 85 52.9
Eucgr.H04430 Eucalyptus grandis HOM05D000604 ORTHO05D004512 7.2e-08 61.6 90 46.7
Glyma.20G230500 Glycine max HOM05D000604 ORTHO05D004512 9.4e-08 61.2 79 41.8
SalBow6G2614 Salvia bowleyana HOM05D000604 ORTHO05D004512 1.2e-07 60.8 86 44.2
Prupe.6G333200 Prunus persica HOM05D000604 ORTHO05D004512 1.6e-07 60.5 86 51.2
ECA232G0151 Erigeron canadensis HOM05D000604 ORTHO05D004512 2.7e-07 59.7 84 44.0
MD12G1227500 Malus domestica HOM05D000604 ORTHO05D004512 3.6e-07 59.3 74 51.4
Nitab4.5_0001165g0020 Nicotiana tabacum HOM05D000604 ORTHO05D004512 3.6e-07 59.3 87 49.4
Migut.K01228 Erythranthe guttata HOM05D000604 ORTHO05D004512 7.9e-07 58.2 86 50.0
Peaxi162Scf00225g00622 Petunia axillaris HOM05D000604 ORTHO05D004512 7.9e-07 58.2 67 50.7
DCAR_020452 Daucus carota HOM05D000604 ORTHO05D004512 1.0e-06 57.8 87 54.0
CiPaw.01G204800 Carya illinoinensis HOM05D000604 ORTHO05D004512 1.8e-06 57.0 68 51.5
CiPaw.02G127200 Carya illinoinensis HOM05D000604 ORTHO05D004512 3.0e-06 56.2 109 40.4
Oeu028231.1 Olea europaea HOM05D000604 ORTHO05D004512 3.0e-06 56.2 84 45.2
Solyc01g098350.3 Solanum lycopersicum HOM05D000604 ORTHO05D004512 3.0e-06 56.2 86 44.2
Sopen01g041910 Solanum pennellii HOM05D000604 ORTHO05D004512 3.0e-06 56.2 86 44.2
PGSC0003DMG400022453 Solanum tuberosum HOM05D000604 ORTHO05D004512 3.9e-06 55.8 85 43.5
SHI08941 Sapria himalayana HOM05D000604 ORTHO05D004512 6.7e-06 55.1 73 49.3
Nitab4.5_0000245g0230 Nicotiana tabacum HOM05D000604 ORTHO05D004512 8.8e-06 54.7 86 47.7


User provided reference genes

Program Settings