Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.2e-83 311.6 146 100.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.1e-70 268.5 146 84.2
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.2e-69 266.5 150 85.3
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.5e-69 266.2 146 84.2
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.0e-69 265.8 146 83.6
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 4.4e-69 264.6 146 83.6
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 79.5
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 82.2
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 81.5
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 83.6
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 3.8e-68 261.5 146 82.9
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 4.9e-68 261.2 146 82.2
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 80.1
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 80.1
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 80.1
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 80.8
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.9e-67 259.2 146 80.8
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.4e-67 258.8 146 80.8
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 3.2e-67 258.5 146 79.5
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 5.4e-67 257.7 146 80.8
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 2.1e-66 255.8 146 80.1
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 6.0e-66 254.2 148 81.1
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.7e-65 252.7 146 78.1
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 3.0e-65 251.9 147 78.9
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 3.9e-65 251.5 146 77.4
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 78.8
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 78.9
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 8.7e-65 250.4 146 76.7
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.5e-64 249.6 137 83.2
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.9e-64 249.2 147 78.9
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 2.5e-64 248.8 146 80.1
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 2.5e-64 248.8 146 80.1
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 77.6
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 77.6
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 77.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 77.4
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 77.4
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.3e-63 246.5 148 77.7
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.8e-63 245.4 147 76.9
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 3.6e-63 245.0 147 75.5
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 74.8
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 74.8
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 76.0
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.1e-62 241.9 147 75.5
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 76.7
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 5.3e-62 241.1 143 74.8
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 76.0
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 76.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 76.2
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 74.0
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 73.3
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 76.0
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 75.3
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 76.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 2.0e-61 239.2 147 74.8
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 2.6e-61 238.8 140 77.9
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 71.9
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 72.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 5.8e-61 237.7 148 76.4
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 5.8e-61 237.7 148 75.0
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 73.3
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 72.6
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.8e-60 235.0 147 74.1
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 6.4e-60 234.2 146 71.2
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 8.4e-60 233.8 147 72.8
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 8.4e-60 233.8 148 75.7
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 70.5
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.4e-59 233.0 151 74.2
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.4e-59 232.3 144 72.2
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 71.9
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 3.2e-59 231.9 148 74.3
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.2e-59 231.9 146 70.5
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.2e-59 231.9 147 73.5
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.2e-59 231.5 146 70.5
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 4.2e-59 231.5 144 73.6
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 5.4e-59 231.1 149 72.5
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 7.1e-59 230.7 148 71.6
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 9.3e-59 230.3 147 70.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 71.2
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 74.7
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 67.8
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-58 229.9 146 71.9
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.2e-58 229.9 146 72.6
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.6e-58 229.6 150 74.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.6e-58 229.6 147 71.4
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 71.9
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 71.9
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.1e-58 229.2 148 73.6
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.7e-58 228.8 146 70.5
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.7e-58 228.8 146 70.5
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 3.5e-58 228.4 146 71.9
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 3.5e-58 228.4 146 71.9
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 7.9e-58 227.3 148 73.0
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.8e-57 226.1 149 71.1
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.3e-57 225.7 146 68.5
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 3.9e-57 224.9 146 69.9
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 5.1e-57 224.6 149 71.1
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 6.7e-57 224.2 146 69.9
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 72.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-56 223.4 147 72.1
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.5e-56 223.0 150 70.7
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.5e-56 223.0 146 66.4
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.9e-56 222.6 132 76.5
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.9e-56 222.6 132 76.5
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.3e-56 221.9 148 70.9
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 3.3e-56 221.9 146 69.2
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 4.3e-56 221.5 130 77.7
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 9.6e-56 220.3 147 70.7
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 9.6e-56 220.3 147 70.7
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.1e-55 219.2 132 75.8
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.8e-55 218.8 146 69.9
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 3.7e-55 218.4 131 71.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 6.2e-55 217.6 147 70.7
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 8.1e-55 217.2 150 69.3
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.8e-54 216.1 147 71.4
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.0e-54 214.9 146 65.8
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 70.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 5.3e-54 214.5 147 68.7
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.9e-54 214.2 140 69.3
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.5e-53 213.0 133 72.2
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.5e-53 213.0 125 75.2
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 7.6e-53 210.7 150 67.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 7.6e-53 210.7 150 67.3
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.9e-53 210.3 117 81.2
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 3.8e-52 208.4 130 74.6
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.4e-51 206.5 146 65.8
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 3.2e-51 205.3 150 70.0
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 9.3e-51 203.8 150 66.7
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 9.3e-51 203.8 150 66.7
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 9.3e-51 203.8 150 66.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-50 203.4 150 68.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.2e-50 203.4 151 62.9
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 6.0e-50 201.1 150 66.0
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 7.9e-50 200.7 150 66.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 5.1e-49 198.0 148 65.5
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 5.1e-49 198.0 148 65.5
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 5.1e-49 198.0 148 65.5
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 7.4e-48 194.1 123 71.5
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.6e-47 193.0 146 62.3
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 4.8e-47 191.4 146 63.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 1.8e-46 189.5 133 68.4
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 5.8e-45 184.5 146 65.1
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-41 172.9 146 63.0
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.4e-38 162.5 146 59.6
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 5.9e-37 157.9 101 69.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.7e-37 157.5 97 78.4
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 3.2e-35 152.1 101 69.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 4.3e-32 141.7 148 52.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.4e-30 136.7 127 51.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 3.0e-25 119.0 68 83.8
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.3e-23 113.6 75 76.0
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.1e-22 110.5 127 51.2
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.1e-22 108.6 166 38.6
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 3.0e-17 92.4 90 50.0
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 7.2e-11 71.2 37 75.7
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 3.6e-10 68.9 99 37.4
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 7.5e-08 61.2 69 42.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.4e-06 57.0 66 48.5


User provided reference genes

Program Settings